当前解析结果
SmilChr03G003705| 统一新 Gene ID | SmilChr03G003705 |
|---|---|
| 名称 | SmilChr03G003705 |
| 描述 | homeobox-leucine zipper protein ANTHOCYANINLESS 2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56001712 - 56007487 / + |
| NCBI Gene ID | LOC131014571 |
|---|---|
| GeneID | 131014571 |
| locus_tag | - |
| NCBI Name | LOC131014571 |
| 原始查询 | LOC131014571 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox-leucine zipper protein ANTHOCYANINLESS 2-like |
| 产物 | homeobox-leucine zipper protein ANTHOCYANINLESS 2-like |
| Arabidopsis | AT4G00730 (ANL2)Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828022] identity=53.6; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0674800 (Roc5(t))- identity=51; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0008289 (lipid binding) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF01852 (START); PF25797 (PDF2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014571 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798564.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057798564.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057798564.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057798564.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057798564.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56003344 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B114 |
Chr3:56003416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr3:56003804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr3:56004032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B69 |
Chr3:56004449 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr3:56006200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B112,B139,C16 |
Chr3:56006235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B52,C28,C61 |
Chr3:56006287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:56006491 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B3 |
Chr3:56006491 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B3 |
Chr3:56006935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B112,B139,C16 |
Chr3:56007154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798564.1PF00046
Homeodomain 122-177 aa
PF01852
START 333-550 aa
PF25797
PDF2_C 566-797 aa
XP_057798565.1PF00046
Homeodomain 54-109 aa
PF01852
START 265-482 aa
PF25797
PDF2_C 498-729 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798564.1 |
Pfam | PF00046 |
Homeodomain | Domain | 122 | 177 | 2.4e-19 | 69.6 | Homeodomain |
XP_057798564.1 |
Pfam | PF01852 |
START | Domain | 333 | 550 | 1e-44 | 153.1 | START domain |
XP_057798564.1 |
Pfam | PF25797 |
PDF2_C | Domain | 566 | 797 | 6.8e-76 | 255.2 | PDF2-like, C-terminal domain |
XP_057798565.1 |
Pfam | PF00046 |
Homeodomain | Domain | 54 | 109 | 2.1e-19 | 69.8 | Homeodomain |
XP_057798565.1 |
Pfam | PF01852 |
START | Domain | 265 | 482 | 8.5e-45 | 153.4 | START domain |
XP_057798565.1 |
Pfam | PF25797 |
PDF2_C | Domain | 498 | 729 | 6.3e-76 | 255.4 | PDF2-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。