当前解析结果
SmilChr03G003721| 统一新 Gene ID | SmilChr03G003721 |
|---|---|
| 名称 | SmilChr03G003721 |
| 描述 | uncharacterized SmilChr03G003721 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56217161 - 56225078 / - |
| NCBI Gene ID | LOC131014585 |
|---|---|
| GeneID | 131014585 |
| locus_tag | - |
| NCBI Name | LOC131014585 |
| 原始查询 | LOC131014585 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:5008305]; symbol=AT5G52882; hit=AT5G52882; species=arabidopsis; confidence=high |
| 产物 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:5008305]; symbol=AT5G52882; hit=AT5G52882; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G52882 (AT5G52882)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:5008305] identity=68.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0226400- identity=65; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005741 (mitochondrial outer membrane); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF17862 (AAA_lid_3); PF24933 (DUF7751) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014585 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 0.60000 | XP_057798578.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057798578.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057798578.1 |
| 4 | Peroxisome membrane | 过氧化物酶体膜 | 0.20000 | XP_057798578.1 |
| 5 | Lipid droplet | 脂滴 | 0.20000 | XP_057798578.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56217470 |
C |
CT |
1bp_insertion | frameshift_variant | 6 | B12,B58,B77,B84,C27,D11 |
Chr3:56217524 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C44 |
Chr3:56217524 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C44 |
Chr3:56217681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B46,B60,B63,B83,C23 |
Chr3:56217859 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D2 |
Chr3:56217859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr3:56218100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B15,B34,C18 |
Chr3:56218412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C47,C8,D2 |
Chr3:56218481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:56220106 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:56220146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B20,B68 |
Chr3:56220189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B19,B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798578.1PF24933
DUF7751 371-431 aa
PF00004
AAA 559-689 aa
PF17862
AAA_lid_3 711-753 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798578.1 |
Pfam | PF24933 |
DUF7751 | Domain | 371 | 431 | 2.8e-35 | 121.2 | Domain of unknown function (DUF7751) |
XP_057798578.1 |
Pfam | PF00004 |
AAA | Domain | 559 | 689 | 2.3e-41 | 142.0 | ATPase family associated with various cellular activities (AAA) |
XP_057798578.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 711 | 753 | 2.5e-14 | 53.2 | AAA+ lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。