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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003766

染色体: Chr03 坐标: 56796009-56801892 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003766
名称SmilChr03G003766
描述cyclic nucleotide-gated ion channel 1
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向56796009 - 56801892 / -

ID 对照

NCBI Gene IDLOC131014625
GeneID131014625
locus_tag-
NCBI NameLOC131014625
原始查询LOC131014625

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cyclic nucleotide-gated ion channel 1
产物cyclic nucleotide-gated ion channel 1
ArabidopsisAT5G53130 (CNGC1)
cyclic nucleotide gated channel 1 [Source:NCBI gene (formerly Entrezgene);Acc:835393]
identity=77.8; qcov=1; evalue=0; confidence=high
RiceOs06g0527100 (OsCNGC12)
-
identity=61.5; qcov=0.997; evalue=0; confidence=high
GOGO:0005216 (monoatomic ion channel activity); GO:0006811 (monoatomic ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGGsmil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00027 (cNMP_binding); PF00520 (Ion_trans)
InterPro-
eggNOG-
NRGeneID:131014625

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057798629.1
2 Nucleus 细胞核 0.00000 XP_057798629.1
3 Chromosome 染色体 0.00000 XP_057798629.1
4 Centromere 着丝粒 0.00000 XP_057798629.1
5 Chromatin 染色质 0.00000 XP_057798629.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:56796397 C T EMS_canonical_SNV CDS_variant 1 B10
Chr3:56796410 C T EMS_canonical_SNV CDS_variant 1 C26
Chr3:56796875 G A EMS_canonical_SNV CDS_variant 1 D11
Chr3:56797697 C T EMS_canonical_SNV CDS_variant 3 B110,B86,D6
Chr3:56797704 G A EMS_canonical_SNV CDS_variant 4 A13,B9,C37,C4
Chr3:56798226 CTT C 2bp_deletion frameshift_variant 143 A11,A13,A14,A16,A18,A19,A22,A24,A25,A3,A4,A5,A8,B100,B104,B108,B109,B11,B110,B114,B115,B117,B118,B120,B122,B124,B125,B127,B131,B132,B135,B136,B137,B139,B17,B19,B20,B21,B23,B26,B27,B28,B29,B3,B30,B31,B38,B40,B42,B44,B45,B47,B48,B49,B5,B53,B54,B55,B58,B60,B61,B62,B64,B65,B67,B68,B69,B7,B71,B72,B73,B76,B8,B83,B84,B85,B86,B88,B9,B90,B92,B93,B94,B95,B97,B98,B99,C10,C11,C13,C14,C17,C19,C21,C22,C23,C24,C25,C27,C29,C3,C30,C31,C33,C37,C38,C39,C4,C40,C41,C42,C44,C46,C48,C5,C52,C53,C57,C58,C62,C63,C64,C65,C66,C69,C7,C71,C74,C75,C78,C79,C8,C80,C81,C83,C84,C86,C87,D10,D3,D6,D8,D9
Chr3:56798236 G A EMS_canonical_SNV CDS_variant 1 A6
Chr3:56799010 C T EMS_canonical_SNV CDS_variant 3 B127,C7,C71
Chr3:56799423 G A EMS_canonical_SNV CDS_variant 1 D6
Chr3:56799443 G A EMS_canonical_SNV CDS_variant 1 B112
Chr3:56799533 C T EMS_canonical_SNV CDS_variant 1 C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798629.1
713 aa
N
1
356
713
Ion_trans
cNMP_binding
C
PF00520 Ion_trans 95-411 aa PF00027 cNMP_binding 505-594 aa
XP_057798630.1
713 aa
N
1
356
713
Ion_trans
cNMP_binding
C
PF00520 Ion_trans 95-411 aa PF00027 cNMP_binding 505-594 aa
XP_057798631.1
713 aa
N
1
356
713
Ion_trans
cNMP_binding
C
PF00520 Ion_trans 95-411 aa PF00027 cNMP_binding 505-594 aa
XP_057798632.1
713 aa
N
1
356
713
Ion_trans
cNMP_binding
C
PF00520 Ion_trans 95-411 aa PF00027 cNMP_binding 505-594 aa
XP_057798633.1
713 aa
N
1
356
713
Ion_trans
cNMP_binding
C
PF00520 Ion_trans 95-411 aa PF00027 cNMP_binding 505-594 aa
XP_057798634.1
713 aa
N
1
356
713
Ion_trans
cNMP_binding
C
PF00520 Ion_trans 95-411 aa PF00027 cNMP_binding 505-594 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057798629.1 Pfam PF00520 Ion_trans Family 95 411 2.1e-17 63.9 Ion transport protein
XP_057798629.1 Pfam PF00027 cNMP_binding Domain 505 594 1.1e-06 29.2 Cyclic nucleotide-binding domain
XP_057798630.1 Pfam PF00520 Ion_trans Family 95 411 2.1e-17 63.9 Ion transport protein
XP_057798630.1 Pfam PF00027 cNMP_binding Domain 505 594 1.1e-06 29.2 Cyclic nucleotide-binding domain
XP_057798631.1 Pfam PF00520 Ion_trans Family 95 411 2.1e-17 63.9 Ion transport protein
XP_057798631.1 Pfam PF00027 cNMP_binding Domain 505 594 1.1e-06 29.2 Cyclic nucleotide-binding domain
XP_057798632.1 Pfam PF00520 Ion_trans Family 95 411 2.1e-17 63.9 Ion transport protein
XP_057798632.1 Pfam PF00027 cNMP_binding Domain 505 594 1.1e-06 29.2 Cyclic nucleotide-binding domain
XP_057798633.1 Pfam PF00520 Ion_trans Family 95 411 2.1e-17 63.9 Ion transport protein
XP_057798633.1 Pfam PF00027 cNMP_binding Domain 505 594 1.1e-06 29.2 Cyclic nucleotide-binding domain
XP_057798634.1 Pfam PF00520 Ion_trans Family 95 411 2.1e-17 63.9 Ion transport protein
XP_057798634.1 Pfam PF00027 cNMP_binding Domain 505 594 1.1e-06 29.2 Cyclic nucleotide-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057942650.1
ATTTCATTTTCTTAATTAAACTATTTCTTTAAATGATTTTGTTAATCATCATTCTCTCAATCTGAAAAGCCAACTGCAAAATCACAAGTTTCCAACTTGCAGGAAAATACTTTTTACATTACTCAAAGAAATTAGAAAGGGAAGTCTACGGGAAGCTTCCTTCACAATCTGTCTTTCTCTCTCACATAGTGATATACGACGTTGTGCACTCGAATTTATAACAACTCATAACTTCTCTATTGCTTTCAATTCAGAGTTTG...
XM_057942649.1
ATTTCTTTAAATGATTTTGTTAATCATCATTCTCTCAATCTGAAAAGCCAACTGCAAAATCACAAGTTTCCAACTTGCAGGAAAATACTTTTTACATTACTCAAAGAAATTAGAAAGGGAAGTCTACGGGAAGCTTCCTTCACAATCTGTCTTTCTCTCTCACATAGTGATATACGACGTTGTGCACTCGAATTTATAACAACTCATAACTTCTCTATAGTTTGAGACGAACAATTCTCTAACAGAAAGAAATCAATTGG...

CDS

6 records

下载 CDS FASTA
LOC131014625
ATGGATTTCTACCGTGAGAAGTTTGTGAGATTTCAAGATTGGAGATCAGAGAAAAGTTTTAGTGAGAAATCTCCCTCTAGTGGTGGAATACATCCGAGTAGACTTAATTCTGCAGTATACTCAATTTCAGACAAATTTCATAGAGGTTTAGAAGCTGGGTCTGATAGAATCAGGAGGTTCAAGGGATCATTAAGATCTTTCTCTTTCGGGAAGTTTCTGACAGATGATGAAGGATCTAGGAGGAAAATTCTTGATCCTCA...
LOC131014625
ATGGATTTCTACCGTGAGAAGTTTGTGAGATTTCAAGATTGGAGATCAGAGAAAAGTTTTAGTGAGAAATCTCCCTCTAGTGGTGGAATACATCCGAGTAGACTTAATTCTGCAGTATACTCAATTTCAGACAAATTTCATAGAGGTTTAGAAGCTGGGTCTGATAGAATCAGGAGGTTCAAGGGATCATTAAGATCTTTCTCTTTCGGGAAGTTTCTGACAGATGATGAAGGATCTAGGAGGAAAATTCTTGATCCTCA...

Protein

6 records

下载 Protein FASTA
XP_057798629.1
MDFYREKFVRFQDWRSEKSFSEKSPSSGGIHPSRLNSAVYSISDKFHRGLEAGSDRIRRFKGSLRSFSFGKFLTDDEGSRRKILDPQGPFLQKWNKIFVLSCLIAISLDPLFFYIPIINGEKKCLDLDKKLELAASILRSFTDIFYLTHIIFQFRTGFIAPYSRVFGRGVLVEDSWEIAKRYLASYFIIDVLAVLPLPQIVILIIIPKMKGARSLNTKNLLKFVVFFQYIPRVLRVYPLYREVTRTSGILTETAWAGAAF...
XP_057798630.1
MDFYREKFVRFQDWRSEKSFSEKSPSSGGIHPSRLNSAVYSISDKFHRGLEAGSDRIRRFKGSLRSFSFGKFLTDDEGSRRKILDPQGPFLQKWNKIFVLSCLIAISLDPLFFYIPIINGEKKCLDLDKKLELAASILRSFTDIFYLTHIIFQFRTGFIAPYSRVFGRGVLVEDSWEIAKRYLASYFIIDVLAVLPLPQIVILIIIPKMKGARSLNTKNLLKFVVFFQYIPRVLRVYPLYREVTRTSGILTETAWAGAAF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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