当前解析结果
SmilChr03G003767| 统一新 Gene ID | SmilChr03G003767 |
|---|---|
| 名称 | SmilChr03G003767 |
| 描述 | uncharacterized SmilChr03G003767 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56813535 - 56818388 / + |
| NCBI Gene ID | LOC131014626 |
|---|---|
| GeneID | 131014626 |
| locus_tag | - |
| NCBI Name | LOC131014626 |
| 原始查询 | LOC131014626 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsDjC18; symbol=OsDjC18; hit=Os02g0510000; species=rice; confidence=medium |
| 产物 | OsDjC18; symbol=OsDjC18; hit=Os02g0510000; species=rice; confidence=medium |
| Arabidopsis | AT5G53150 (AT5G53150)DnaJ heat shock amino-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:835396] identity=42.3; qcov=1.03; evalue=0; confidence=medium |
| Rice | Os02g0510000 (OsDjC18)- identity=42.7; qcov=1.02; evalue=0; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00226 (DnaJ); PF11926 (DUF3444); PF23551 (Zn_ribbon_20) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014626 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798635.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057798635.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057798635.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057798635.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057798635.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56816104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B13,B19,B78 |
Chr3:56816190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C54 |
Chr3:56816203 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr3:56816221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,C63 |
Chr3:56816247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr3:56816689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:56816757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B45,B54,C63,C79 |
Chr3:56816915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,D6 |
Chr3:56816936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,B22,C37 |
Chr3:56817346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,C79,D6 |
Chr3:56817416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr3:56817812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B140,B94,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798635.1PF00226
DnaJ 66-127 aa
PF23551
Zn_ribbon_20 193-226 aa
PF11926
DUF3444 462-667 aa
XP_057798636.1PF00226
DnaJ 66-127 aa
PF23551
Zn_ribbon_20 193-226 aa
PF11926
DUF3444 462-667 aa
XP_057798637.1PF00226
DnaJ 66-127 aa
PF23551
Zn_ribbon_20 193-226 aa
PF11926
DUF3444 462-667 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798635.1 |
Pfam | PF00226 |
DnaJ | Domain | 66 | 127 | 4.5e-22 | 78.6 | DnaJ domain |
XP_057798635.1 |
Pfam | PF23551 |
Zn_ribbon_20 | Domain | 193 | 226 | 1.2e-16 | 61.2 | Zinc beta-ribbon domain |
XP_057798635.1 |
Pfam | PF11926 |
DUF3444 | Family | 462 | 667 | 9.7e-78 | 261.3 | Domain of unknown function (DUF3444) |
XP_057798636.1 |
Pfam | PF00226 |
DnaJ | Domain | 66 | 127 | 4.5e-22 | 78.6 | DnaJ domain |
XP_057798636.1 |
Pfam | PF23551 |
Zn_ribbon_20 | Domain | 193 | 226 | 1.2e-16 | 61.2 | Zinc beta-ribbon domain |
XP_057798636.1 |
Pfam | PF11926 |
DUF3444 | Family | 462 | 667 | 9.7e-78 | 261.3 | Domain of unknown function (DUF3444) |
XP_057798637.1 |
Pfam | PF00226 |
DnaJ | Domain | 66 | 127 | 4.5e-22 | 78.6 | DnaJ domain |
XP_057798637.1 |
Pfam | PF23551 |
Zn_ribbon_20 | Domain | 193 | 226 | 1.2e-16 | 61.2 | Zinc beta-ribbon domain |
XP_057798637.1 |
Pfam | PF11926 |
DUF3444 | Family | 462 | 667 | 9.7e-78 | 261.3 | Domain of unknown function (DUF3444) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。