Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002234`

染色体: Chr01 坐标: 38845130-38849247 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002234`
名称	SmilChr01G002234
描述	beta-1,3-galactosyltransferase 7-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	38845130 - 38849247 / `-`

ID 对照

NCBI Gene ID	`LOC131014638`
GeneID	`131014638`
locus_tag	`-`
NCBI Name	`LOC131014638`
原始查询	`LOC131014638`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-1,3-galactosyltransferase 7-like
产物	beta-1%2C3-galactosyltransferase 7-like
Arabidopsis	`AT1G77810` (AT1G77810) Galactosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844443] identity=74.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0566800` - identity=77.5; qcov=0.929; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0006486 (GO:0006486); GO:0048531 (beta-1,3-galactosyltransferase activity)
KEGG	-
Pfam	PF01762 (Galactosyl_T); PF13334 (DUF4094)
InterPro	-
eggNOG	-
NR	GeneID:131014638

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057798659.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057798659.1`
3	Nucleus	细胞核	0.00000	`XP_057798659.1`
4	Chromosome	染色体	0.00000	`XP_057798659.1`
5	Centromere	着丝粒	0.00000	`XP_057798659.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:38846953`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B47,C2,C48,D7
`Chr1:38847132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B47,C2,C48,D7
`Chr1:38847467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr1:38847472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:38848366`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr1:38848506`	`C`	`CGT`	2bp_insertion	frameshift_variant	57	A22,A5,A9,B104,B105,B119,B121,B122,B127,B128,B129,B130,B131,B135,B136,B15,B19,B20,B21,B24,B32,B41,B44,B45,B54,B59,B66,B69,B73,B9,B90,B98,B99,C11,C21,C22,C26,C27,C28,C33,C34,C35,C38,C39,C42,C47,C51,C56,C58,C6,C68,C73,C8,C80,C83,D11,D6
`Chr1:38848769`	`C`	`CA`	1bp_insertion	frameshift_variant	239	A1,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B117,B118,B119,B12,B120,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B134,B135,B136,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B33,B34,B35,B36,B37,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B82,B83,B84,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C4,C41,C42,C43,C45,C46,C47,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D6,D7,D8,D9
`Chr1:38848789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B44,B73,B82,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798659.1

394 aa

197

394

DUF4094

Galactosyl_T

PF13334 DUF4094 9-103 aa PF01762 Galactosyl_T 139-335 aa

XP_057798666.1

394 aa

197

394

DUF4094

Galactosyl_T

PF13334 DUF4094 9-103 aa PF01762 Galactosyl_T 139-335 aa

XP_057798674.1

393 aa

196

393

DUF4094

Galactosyl_T

PF13334 DUF4094 9-102 aa PF01762 Galactosyl_T 138-334 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798659.1`	Pfam	`PF13334`	DUF4094	Family	9	103	1.1e-30	106.6	Domain of unknown function (DUF4094)
`XP_057798659.1`	Pfam	`PF01762`	Galactosyl_T	Family	139	335	4e-48	164.5	Galactosyltransferase
`XP_057798666.1`	Pfam	`PF13334`	DUF4094	Family	9	103	1.1e-30	106.6	Domain of unknown function (DUF4094)
`XP_057798666.1`	Pfam	`PF01762`	Galactosyl_T	Family	139	335	4e-48	164.5	Galactosyltransferase
`XP_057798674.1`	Pfam	`PF13334`	DUF4094	Family	9	102	8.6e-31	107.0	Domain of unknown function (DUF4094)
`XP_057798674.1`	Pfam	`PF01762`	Galactosyl_T	Family	138	334	4e-48	164.5	Galactosyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942676.1
ATTATTATTATCTTGCGGTTTTATTCCCGAATTTCCATCGACATTCCTCCTCCATTTTTCTCCCAGCTCCATCGCCGCACGTCGTTCCGACAATCTCCAAGTTTATTTATCCCAGATTTCGGACAAAGAATTCAGCTCCAATTCTGGGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTGAATTTGCGTAGAAATCGAAGAAGGGGACGAGAAGAAGCGATGAAGAGTAAAAATGCGAAGGTTTCAG...

XM_057942691.1
TTATCTTGCGGTTTTATTCCCGAATTTCCATCGACATTCCTCCTCCATTTTTCTCCCAGCTCCATCGCCGCACGTCGTTCCGACAATCTCCAAGTTTATTTATCCCAGATTTCGGACAAAGAATTCAGCTCCAATTCTGGGTTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTGAATTTGCGTAGAAATCGAAGAAGGGGACGAGAAGAAGCGATGAAGAGTAAAAATGCGAAGGTTTCAGTGAAATG...

CDS

3 records

下载 CDS FASTA

LOC131014638
ATGAAGAGTAAAAATGCGAAGGTTTCAGTGAAATGGATTCCCGTTTTCTCCATTTGTTTCTTCATGATTGGCATGGTTTTCACCAACAAATTTTGGGGTTCGTTGGAATCGAATAATCAGCTCATAACTCAGCAAAGAAGGGATCAAGAGCTGCAGATCGTCTCCGAGGATTGCAATACTAAGAAGAAGGCAGAAGATAAGGACAATGATGTAATGAAGGAGGTTTATAAAACACATGAAGCAATCCAGGGGTTAGATAA...

LOC131014638
ATGAAGAGTAAAAATGCGAAGGTTTCAGTGAAATGGATTCCCGTTTTCTCCATTTGTTTCTTCATGATTGGCATGGTTTTCACCAACAAATTTTGGGGTTCGTTGGAATCGAATAATCAGCTCATAACTCAGCAAAGAAGGGATCAAGAGCTGCAGATCGTCTCCGAGGATTGCAATACTAAGAAGAAGAAGGCAGAAGATAAGGACAATGATGTAATGAAGGAGGTTTATAAAACACATGAAGCAATCCAGGGGTTAGA...

Protein

3 records

下载 Protein FASTA

XP_057798659.1
MKSKNAKVSVKWIPVFSICFFMIGMVFTNKFWGSLESNNQLITQQRRDQELQIVSEDCNTKKKKAEDKDNDVMKEVYKTHEAIQGLDKSISMLQMELSASRSAQERRKGDEPTPTANQEPVRKKAFMVIGINTAFSSRKRRDSVRETWMPQGDQLRRLEEEKGIVVRFMIGHSATSNSILDRALDSEEAQHKDFLRLEHVEGYHELSAKTKIFFATAVAKWDADFYVKVDDDVHVNLGTFAATLARHRSKPRVYIGCMKS...

XP_057798666.1
MKSKNAKVSVKWIPVFSICFFMIGMVFTNKFWGSLESNNQLITQQRRDQELQIVSEDCNTKKKKAEDKDNDVMKEVYKTHEAIQGLDKSISMLQMELSASRSAQERRKGDEPTPTANQEPVRKKAFMVIGINTAFSSRKRRDSVRETWMPQGDQLRRLEEEKGIVVRFMIGHSATSNSILDRALDSEEAQHKDFLRLEHVEGYHELSAKTKIFFATAVAKWDADFYVKVDDDVHVNLGTFAATLARHRSKPRVYIGCMKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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