当前解析结果
SmilChr03G003803| 统一新 Gene ID | SmilChr03G003803 |
|---|---|
| 名称 | SmilChr03G003803 |
| 描述 | rust resistance kinase Lr10-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57111623 - 57114802 / - |
| NCBI Gene ID | LOC131014659 |
|---|---|
| GeneID | 131014659 |
| locus_tag | - |
| NCBI Name | LOC131014659 |
| 原始查询 | LOC131014659 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | rust resistance kinase Lr10-like |
| 产物 | rust resistance kinase Lr10-like |
| Arabidopsis | AT5G38280 (PR5K)PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810] identity=48.2; qcov=0.708; evalue=6.77e-103; confidence=high |
| Rice | Os01g0117300 (OsRLCK17)- identity=52.8; qcov=0.743; evalue=2.79e-123; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014659 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798681.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798681.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798681.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798681.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798681.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57111676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B2,B96 |
Chr3:57111695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C79 |
Chr3:57111711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B2,C67,C72 |
Chr3:57111715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,B78 |
Chr3:57111740 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B42,B43 |
Chr3:57111740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:57111781 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr3:57111798 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B75,C45,D10,D11 |
Chr3:57111828 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,B47,C14 |
Chr3:57111912 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A16,B136,B26,B59,B64,C27,C36,C39,C52,C69 |
Chr3:57111963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr3:57111967 |
ATC |
* |
2bp_deletion | CDS_variant | 1 | C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798681.1PF07714
PK_Tyr_Ser-Thr 192-462 aa
PF00069
Pkinase 193-460 aa
XP_057798682.1PF07714
PK_Tyr_Ser-Thr 102-372 aa
PF00069
Pkinase 103-370 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798681.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 192 | 462 | 3.5e-44 | 151.8 | Protein tyrosine and serine/threonine kinase |
XP_057798681.1 |
Pfam | PF00069 |
Pkinase | Domain | 193 | 460 | 2.6e-42 | 145.7 | Protein kinase domain |
XP_057798682.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 102 | 372 | 2.1e-44 | 152.5 | Protein tyrosine and serine/threonine kinase |
XP_057798682.1 |
Pfam | PF00069 |
Pkinase | Domain | 103 | 370 | 1.6e-42 | 146.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。