Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003803

染色体: Chr03 坐标: 57111623-57114802 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003803
名称SmilChr03G003803
描述rust resistance kinase Lr10-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向57111623 - 57114802 / -

ID 对照

NCBI Gene IDLOC131014659
GeneID131014659
locus_tag-
NCBI NameLOC131014659
原始查询LOC131014659

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述rust resistance kinase Lr10-like
产物rust resistance kinase Lr10-like
ArabidopsisAT5G38280 (PR5K)
PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810]
identity=48.2; qcov=0.708; evalue=6.77e-103; confidence=high
RiceOs01g0117300 (OsRLCK17)
-
identity=52.8; qcov=0.743; evalue=2.79e-123; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131014659

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057798681.1
2 Nucleus 细胞核 0.00000 XP_057798681.1
3 Chromosome 染色体 0.00000 XP_057798681.1
4 Centromere 着丝粒 0.00000 XP_057798681.1
5 Chromatin 染色质 0.00000 XP_057798681.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:57111676 C T EMS_canonical_SNV CDS_variant 3 B130,B2,B96
Chr3:57111695 G A EMS_canonical_SNV CDS_variant 2 B95,C79
Chr3:57111711 G A EMS_canonical_SNV CDS_variant 4 B130,B2,C67,C72
Chr3:57111715 C T EMS_canonical_SNV CDS_variant 2 B4,B78
Chr3:57111740 C T EMS_canonical_SNV stop_gained 2 B42,B43
Chr3:57111740 C T EMS_canonical_SNV CDS_variant 2 B42,B43
Chr3:57111781 C T EMS_canonical_SNV CDS_variant 1 B135
Chr3:57111798 C T EMS_canonical_SNV CDS_variant 4 B75,C45,D10,D11
Chr3:57111828 C T EMS_canonical_SNV CDS_variant 3 B4,B47,C14
Chr3:57111912 G A EMS_canonical_SNV stop_gained 10 A16,B136,B26,B59,B64,C27,C36,C39,C52,C69
Chr3:57111963 C T EMS_canonical_SNV CDS_variant 1 B135
Chr3:57111967 ATC * 2bp_deletion CDS_variant 1 C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057798681.1
518 aa
N
1
259
518
PK_Tyr_Ser-Thr
Pkinase
C
PF07714 PK_Tyr_Ser-Thr 192-462 aa PF00069 Pkinase 193-460 aa
XP_057798682.1
428 aa
N
1
214
428
PK_Tyr_Ser-Thr
Pkinase
C
PF07714 PK_Tyr_Ser-Thr 102-372 aa PF00069 Pkinase 103-370 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057798681.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 192 462 3.5e-44 151.8 Protein tyrosine and serine/threonine kinase
XP_057798681.1 Pfam PF00069 Pkinase Domain 193 460 2.6e-42 145.7 Protein kinase domain
XP_057798682.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 102 372 2.1e-44 152.5 Protein tyrosine and serine/threonine kinase
XP_057798682.1 Pfam PF00069 Pkinase Domain 103 370 1.6e-42 146.5 Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057942698.1
CTCCATTTGGTAAAGATGACAACTGAAACCATCCTCTTCCTCACATCTTCATCTCTCTTAATTCTCTTATTTCAAACTTGTGATGCCAAGTACTCTTATTGCAGCCCTTCTGCGTGTGGCGTTATTCGCAACATTAGCTACCCTTACCGCCTCAACGATGATCCCAACCACTGTGGCGATCGCAGATATGAATTAGCATATGTGAGAACAATGTCACCTTCCTCTATCTAAACACCCATAAGTTCTACGTCAAACAGATC...
XM_057942699.1
CCACCACTCTCTCTTGTATGGATTTGACCTTCTCATCTGCCAGGACTGCAGAGAATATTCATACTCTACGTGGGATGAATTCGTAAAGTTTTTTGTCATAAGACTTACAGGCCCTGTCTTGATGGTTCTGGTAATTGTAGAAACGTTCCAGTTCTCATAAGTGCAGCAATAAGCCCTCCTGTAATGGCCATCATTGGATTCGCTGTGGTGGTAGGACTCTCATTACATGTTGCCTTATACAGTTATTGGCACAAGCACAA...

CDS

2 records

下载 CDS FASTA
LOC131014659
ATGAATGCCTCAGAGGTACCGCCTATGTGCGGAATAGATCTGATAGCGATGACGTCGTGGGAGTTTGAAGATCTCAACAACGTATCGCTATCAGAAATCCACCACTCTCTCTTGTATGGATTTGACCTTCTCATCTGCCAGGACTGCAGAGAATATTCATACTCTACGTGGGATGAATTCGTAAAGTTTTTTGTCATAAGACTTACAGGCCCTGTCTTGATGGTTCTGGTAATTGTAGTTCTCATAAGTGCAGCAATAAG...
LOC131014659
ATGGCCATCATTGGATTCGCTGTGGTGGTAGGACTCTCATTACATGTTGCCTTATACAGTTATTGGCACAAGCACAATTATGTTTTCCAAAGCAACGCACAATCAGCCATCATTCCAACCGTCATCATGATCTGTGCACCAAGGCTCATCATTTGCCCCTTCGTAGTGTGGCTTTTGATTCACAAATTTCGAACAAGGCATTTCTCCTTATTTGAGGGAGTAGAATCGTTCCTACAAAGTGAAAACAATCTTGCGCCAAT...

Protein

2 records

下载 Protein FASTA
XP_057798681.1
MNASEVPPMCGIDLIAMTSWEFEDLNNVSLSEIHHSLLYGFDLLICQDCREYSYSTWDEFVKFFVIRLTGPVLMVLVIVVLISAAISPPVMAIIGFAVVVGLSLHVALYSYWHKHNYVFQSNAQSAIIPTVIMICAPRLIICPFVVWLLIHKFRTRHFSLFEGVESFLQSENNLAPIRYSYSDIKKMTKGFQVKLGEGGYGSVYKGKLRSGHDVAIKLLGKSGGNGQDFMNEIATIGRIHHVNVVKLVGYCAHGSKRALV...
XP_057798682.1
MAIIGFAVVVGLSLHVALYSYWHKHNYVFQSNAQSAIIPTVIMICAPRLIICPFVVWLLIHKFRTRHFSLFEGVESFLQSENNLAPIRYSYSDIKKMTKGFQVKLGEGGYGSVYKGKLRSGHDVAIKLLGKSGGNGQDFMNEIATIGRIHHVNVVKLVGYCAHGSKRALVYDFMPNGSLEKYLFNPEKMDSLNWNKKFEIAVGVARGIEYLHRGCDVQILHFDIKPHNILLDDNFVPKVSDFGLAKFFSTDKNAVTMTAC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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