Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003813`

染色体: Chr03 坐标: 57166094-57168788 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003813`
名称	SmilChr03G003813
描述	rust resistance kinase Lr10-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57166094 - 57168788 / `-`

ID 对照

NCBI Gene ID	`LOC131014668`
GeneID	`131014668`
locus_tag	`-`
NCBI Name	`LOC131014668`
原始查询	`LOC131014668`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rust resistance kinase Lr10-like
产物	rust resistance kinase Lr10-like
Arabidopsis	`AT5G38280` (PR5K) PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810] identity=48.8; qcov=0.902; evalue=3.57e-108; confidence=high
Rice	`Os01g0117500` - identity=51.8; qcov=0.93; evalue=1.82e-122; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131014668

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798692.1`
2	Nucleus	细胞核	0.00000	`XP_057798692.1`
3	Chromosome	染色体	0.00000	`XP_057798692.1`
4	Centromere	着丝粒	0.00000	`XP_057798692.1`
5	Chromatin	染色质	0.00000	`XP_057798692.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57166171`	`TAA`	`T`	2bp_deletion	frameshift_variant	12	B123,B126,B128,B14,B31,B91,C16,C43,C53,C65,D5,D7
`Chr3:57166176`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:57166286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:57166324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr3:57166563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,C51
`Chr3:57166636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B94
`Chr3:57166658`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B121,B138
`Chr3:57166677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr3:57166682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr3:57166728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C40,C7
`Chr3:57166732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B29,B38,B39,B5,B65
`Chr3:57166749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C40,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798692.1

439 aa

220

439

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 128-397 aa PF00069 Pkinase 130-395 aa

XP_057798693.1

357 aa

178

357

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 46-315 aa PF00069 Pkinase 48-313 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798692.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	128	397	1.2e-43	150.0	Protein tyrosine and serine/threonine kinase
`XP_057798692.1`	Pfam	`PF00069`	Pkinase	Domain	130	395	1.9e-48	165.9	Protein kinase domain
`XP_057798693.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	46	315	6.4e-44	150.9	Protein tyrosine and serine/threonine kinase
`XP_057798693.1`	Pfam	`PF00069`	Pkinase	Domain	48	313	1.3e-48	166.4	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942710.1
GACTTGGTCATAGATGATTCATAGTTGCACCATTATCCCAAGTGACATTTCATCTATAGCCTTTTAAGATGTGAAGTTTGTAGTGGAAAAATCTGAAGCAAGAAGGATGATCACAATTCAAAACCTCTTCACTTTTTCACCTCTCTTGATTGTTTTCTTTCAAACTTGTAATGCAACAGATTGTAGCCCTTCTGCATGTGGCCTTATTCCCAATATTAGCTCCCCTTTCCGCCTCAAGGGTGATTCCAAGCACTGTGGTG...

XM_057942709.1
ATAAAAACAAGGCGATTAATTGATAGGGATGTATCCATGTTTATTCCTCATTGCTCAGATGGTCCATCTGCAGGCTGTCTACTCATTTTTCTGCTCATAGTCGCTGTTGTATTTGCAGGGGTTAGCATTCCAGCAAAGATCATCATTGGATTTGGCGCCTCCTATTGGATTCTTTTCAAGGATACCATAGTCCCGATCAGTTTCTCATGGAGGCGCCTCGATAGTCAACGTTTCATCGTTGTTAGCTTTGGAGTAAGATT...

CDS

2 records

下载 CDS FASTA

LOC131014668
ATGTTTATTCCTCATTGCTCAGATGGTCCATCTGCAGGCTGTCTACTCATTTTTCTGCTCATAGTCGCTGTTGTATTTGCAGGGGTTAGCATTCCAGCAAAGATCATCATTGGATTTGGCGCCTCCTATTGGATTCTTTTCAAGGATACCATAGTCCCGATCAGTTTCTCATGGAGGCGCCTCGATAGTCAACGTTTCATCGTTGTTAGCTTTGGAGTAAGATTCATCGTTGGGATTCTTGGCGCGATGGTGTTCCTGCT...

LOC131014668
ATGGTGTTCCTGCTCTACAAATTCCTAAGAAGGCGCTTTTCGGTGTACGATCAAATTGAAGGCTTCCTACAGAGTGACAACCAACTCTCACCAATCAGATACTCCTATTCAGATATAAAGAAGATGACGAGAGGTTTTCGAGAAAAACTAGGCCAAGGAGGGTTCGGTTCAGTTTACAAAGGAAAGCTCCAAAGTGGGCATCATGTTGCAGTCAAACTGCTTGGAAAATCTGGGGCAAACGGGCAAGACTTCATCAATGA...

Protein

2 records

下载 Protein FASTA

XP_057798692.1
MFIPHCSDGPSAGCLLIFLLIVAVVFAGVSIPAKIIIGFGASYWILFKDTIVPISFSWRRLDSQRFIVVSFGVRFIVGILGAMVFLLYKFLRRRFSVYDQIEGFLQSDNQLSPIRYSYSDIKKMTRGFREKLGQGGFGSVYKGKLQSGHHVAVKLLGKSGANGQDFINEIGTIGRIHHVNVVKLIGYCAERSKRALIFDFMPNGSLEKYVLNREKASSLDWDMKFKIAVGVARGVEYLHRGCDIQILHFDIKPHNILLDD...

XP_057798693.1
MVFLLYKFLRRRFSVYDQIEGFLQSDNQLSPIRYSYSDIKKMTRGFREKLGQGGFGSVYKGKLQSGHHVAVKLLGKSGANGQDFINEIGTIGRIHHVNVVKLIGYCAERSKRALIFDFMPNGSLEKYVLNREKASSLDWDMKFKIAVGVARGVEYLHRGCDIQILHFDIKPHNILLDDKFVPKISDFGLAKLCSTEKDTVTMTAVRGTIGYVAPELINRSIGEVSYKVDVYSFGMLLVDMVGLKRDFIGNNDVSSKYFPY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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