Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003865`

染色体: Chr03 坐标: 57724565-57729104 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003865`
名称	SmilChr03G003865
描述	uncharacterized SmilChr03G003865
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57724565 - 57729104 / `-`

ID 对照

NCBI Gene ID	`LOC131014688`
GeneID	`131014688`
locus_tag	`-`
NCBI Name	`LOC131014688`
原始查询	`LOC131014688`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832502]; symbol=AT5G24320; hit=AT5G24320; species=arabidopsis; confidence=high
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832502]; symbol=AT5G24320; hit=AT5G24320; species=arabidopsis; confidence=high
Arabidopsis	`AT5G24320` (AT5G24320) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832502] identity=45.7; qcov=1.04; evalue=0; confidence=high
Rice	`Os03g0115400` (OsWD40-60) - identity=48.7; qcov=0.759; evalue=2.78e-167; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131014688

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057798722.1`
2	Cytosol	细胞质基质	0.40000	`XP_057798722.1`
3	Nucleus	细胞核	0.00000	`XP_057798722.1`
4	Chromosome	染色体	0.00000	`XP_057798722.1`
5	Centromere	着丝粒	0.00000	`XP_057798722.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57725496`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,D6
`Chr3:57725513`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C47
`Chr3:57725513`	`GA`	`G`	1bp_deletion	CDS_variant	1	C47
`Chr3:57725888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B90,B92,D4
`Chr3:57725914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B69,B90,B92,D4
`Chr3:57725917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,B117,C7
`Chr3:57726084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B42,B43,C64,C66,D10
`Chr3:57726350`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,C54
`Chr3:57726986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B64,D6
`Chr3:57727104`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B24,B72,C40
`Chr3:57727205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B136,B4,C72,C73
`Chr3:57727566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798722.1

706 aa

353

706

WD40

PF00400 WD40 258-289 aa PF00400 WD40 357-392 aa PF00400 WD40 399-435 aa PF00400 WD40 547-570 aa

XP_057798723.1

706 aa

353

706

WD40

PF00400 WD40 258-289 aa PF00400 WD40 357-392 aa PF00400 WD40 399-435 aa PF00400 WD40 547-570 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798722.1`	Pfam	`PF00400`	WD40	Repeat	258	289	7.1e-31	106.0	WD domain, G-beta repeat
`XP_057798722.1`	Pfam	`PF00400`	WD40	Repeat	357	392	7.1e-31	106.0	WD domain, G-beta repeat
`XP_057798722.1`	Pfam	`PF00400`	WD40	Repeat	399	435	7.1e-31	106.0	WD domain, G-beta repeat
`XP_057798722.1`	Pfam	`PF00400`	WD40	Repeat	547	570	7.1e-31	106.0	WD domain, G-beta repeat
`XP_057798723.1`	Pfam	`PF00400`	WD40	Repeat	258	289	7.1e-31	106.0	WD domain, G-beta repeat
`XP_057798723.1`	Pfam	`PF00400`	WD40	Repeat	357	392	7.1e-31	106.0	WD domain, G-beta repeat
`XP_057798723.1`	Pfam	`PF00400`	WD40	Repeat	399	435	7.1e-31	106.0	WD domain, G-beta repeat
`XP_057798723.1`	Pfam	`PF00400`	WD40	Repeat	547	570	7.1e-31	106.0	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942740.1
GTTTTTTTTTTTTAAAACATCTTCTTATATATAGAAAATTCTCTATTTTATCTTATCTATATTATTAAAAATCGTTTGGTTGTATTCCTGATATATGTATATGGAGAGAGAGAGAAAATTTCGGTTTTATATTGGAAAGCAATAAGCACATTGCCTAGGTTTTCAAAAGCTTATCTTTTGAAGAGGGGTCTACTTTGTCTTTCCATGGCTTGAACTTGAGCAGTCATGGATAGCTTCAGTGACGAGGGCGAAGAATCGCG...

XM_057942739.1
TATTCCTGATATATGTATATGGAGAGAGAGAGAAAATTTCGGTGAGTAAATTGGGGCATAATTGCAGAGAATACTGTTTAGCACACGCACTGTTACACACACAACACACACACAAACGGAGCTCGCAATCTCGTTTCTCGGGCCATCCATTCACGGATATCAAGGAATTTCTGCCTTTTTCATTTTCCATTTTTAGATTATTTTTTCACCCTCTTTTTTGGCCCCCTTAATTTTTCCATGAGCTATGATTTTTCTCGAAT...

CDS

2 records

下载 CDS FASTA

LOC131014688
ATGGATAGCTTCAGTGACGAGGGCGAAGAATCGCGGTTTTTTGACGCCCTCGAGCACATTGCACAAGAGCCTGATGTGGATAATGTCTCATCATCTAAAGATTGGGAATATGAGCTATGGACTAGTATACCTCGAAGTGTTAGGGAGCGCCGCAGCAAATTCATTAAATGGATGCTGAGCCCCGATGCATCTGAGGGAGAGAATTCTGTGGATGCCCGTGATAGTGGTGATGGTGGTTTTTTCATTGGAGATATTTACAG...

Protein

2 records

下载 Protein FASTA

XP_057798722.1
MDSFSDEGEESRFFDALEHIAQEPDVDNVSSSKDWEYELWTSIPRSVRERRSKFIKWMLSPDASEGENSVDARDSGDGGFFIGDIYRIMEDDGAVLGTSGIKDSFSSSLSSLSSWNADDLDMPHGIGSNDISRTCNVGTEFRVVQNDRLGEVWAGGLDQFQSSGKFEAQSSPSGQQLVKREIEFNHDAPTFIDRLMDRWLSKWRSMSCMMSVNVKDDKDDARLHCFSQAQGKKNRRVKVQHCRKKLKELSGLFTGQDIQA...

XP_057798723.1
MDSFSDEGEESRFFDALEHIAQEPDVDNVSSSKDWEYELWTSIPRSVRERRSKFIKWMLSPDASEGENSVDARDSGDGGFFIGDIYRIMEDDGAVLGTSGIKDSFSSSLSSLSSWNADDLDMPHGIGSNDISRTCNVGTEFRVVQNDRLGEVWAGGLDQFQSSGKFEAQSSPSGQQLVKREIEFNHDAPTFIDRLMDRWLSKWRSMSCMMSVNVKDDKDDARLHCFSQAQGKKNRRVKVQHCRKKLKELSGLFTGQDIQA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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