当前解析结果
SmilChr03G003833| 统一新 Gene ID | SmilChr03G003833 |
|---|---|
| 名称 | SmilChr03G003833 |
| 描述 | phosphatidylinositol 4-kinase gamma 4-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57472549 - 57475949 / - |
| NCBI Gene ID | LOC131014696 |
|---|---|
| GeneID | 131014696 |
| locus_tag | - |
| NCBI Name | LOC131014696 |
| 原始查询 | LOC131014696 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphatidylinositol 4-kinase gamma 4-like |
| 产物 | phosphatidylinositol 4-kinase gamma 4-like |
| Arabidopsis | AT5G24240 (AT5G24240)phosphatidylinositol 4-kinase gamma-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832491] identity=61.8; qcov=0.998; evalue=0; confidence=high |
| Rice | Os05g0590100- identity=59.3; qcov=0.962; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00240 (ubiquitin); PF00454 (PI3_PI4_kinase); PF11976 (Rad60-SLD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014696 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057798733.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057798733.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798733.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798733.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798733.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57473162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B17,B90,B92 |
Chr3:57473183 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr3:57473292 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:57473852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,C36,C4 |
Chr3:57473875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,C40 |
Chr3:57473883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,C36,C71 |
Chr3:57473907 |
C |
CAT |
2bp_insertion | frameshift_variant | 3 | A9,C36,C71 |
Chr3:57473907 |
C |
CAT |
2bp_insertion | CDS_variant | 3 | A9,C36,C71 |
Chr3:57473920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B31,C36,C71 |
Chr3:57473949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B136,B26,B59,C52 |
Chr3:57474471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:57474655 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B132,B37,B63,B85,B89 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798733.1PF00240
ubiquitin 39-106 aa
PF11976
Rad60-SLD 44-104 aa
PF00240
ubiquitin 112-184 aa
PF00454
PI3_PI4_kinase 279-529 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798733.1 |
Pfam | PF00240 |
ubiquitin | Domain | 39 | 106 | 3.4e-26 | 91.5 | Ubiquitin family |
XP_057798733.1 |
Pfam | PF11976 |
Rad60-SLD | Family | 44 | 104 | 1.6e-10 | 41.3 | Ubiquitin-2 like Rad60 SUMO-like |
XP_057798733.1 |
Pfam | PF00240 |
ubiquitin | Domain | 112 | 184 | 3.4e-26 | 91.5 | Ubiquitin family |
XP_057798733.1 |
Pfam | PF00454 |
PI3_PI4_kinase | Family | 279 | 529 | 1.7e-52 | 179.5 | Phosphatidylinositol 3- and 4-kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。