当前解析结果
SmilChr03G003856| 统一新 Gene ID | SmilChr03G003856 |
|---|---|
| 名称 | SmilChr03G003856 |
| 描述 | uncharacterized SmilChr03G003856 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57653959 - 57658736 / - |
| NCBI Gene ID | LOC131014697 |
|---|---|
| GeneID | 131014697 |
| locus_tag | - |
| NCBI Name | LOC131014697 |
| 原始查询 | LOC131014697 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835388]; symbol=AT5G53080; hit=AT5G53080; species=arabidopsis; confidence=high |
| 产物 | Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835388]; symbol=AT5G53080; hit=AT5G53080; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G53080 (AT5G53080)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835388] identity=52; qcov=0.928; evalue=0; confidence=high |
| Rice | Os02g0109800- identity=22.9; qcov=0.458; evalue=5.64e-08; confidence=weak |
| GO | GO:0005515 (protein binding); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization) |
| KEGG | - |
| Pfam | PF13181 (TPR_8); PF13374 (TPR_10); PF13424 (TPR_12) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014697 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057798734.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057798734.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057798734.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798734.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798734.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57654857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B56,B96,C50,C83 |
Chr3:57655305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:57655349 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B108,B85,C23,C9 |
Chr3:57655354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B119,B65 |
Chr3:57656259 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B115 |
Chr3:57656259 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B115 |
Chr3:57656567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,C79 |
Chr3:57656633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B56,B96,C50,C83 |
Chr3:57657016 |
A |
AAC |
2bp_insertion | frameshift_variant | 2 | B64,C71 |
Chr3:57657016 |
A |
AAC |
2bp_insertion | CDS_variant | 2 | B64,C71 |
Chr3:57657018 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B64,C71 |
Chr3:57657018 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B64,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798734.1PF13424
TPR_12 205-277 aa
PF13181
TPR_8 206-233 aa
PF13424
TPR_12 290-360 aa
PF13424
TPR_12 377-444 aa
PF13374
TPR_10 460-494 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798734.1 |
Pfam | PF13424 |
TPR_12 | Repeat | 205 | 277 | 3.6e-45 | 152.7 | Tetratricopeptide repeat |
XP_057798734.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 206 | 233 | 3.7e-07 | 30.5 | Tetratricopeptide repeat |
XP_057798734.1 |
Pfam | PF13424 |
TPR_12 | Repeat | 290 | 360 | 3.6e-45 | 152.7 | Tetratricopeptide repeat |
XP_057798734.1 |
Pfam | PF13424 |
TPR_12 | Repeat | 377 | 444 | 3.6e-45 | 152.7 | Tetratricopeptide repeat |
XP_057798734.1 |
Pfam | PF13374 |
TPR_10 | Repeat | 460 | 494 | 1.6e-28 | 98.6 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。