Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002253`

染色体: Chr01 坐标: 39169249-39176589 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002253`
名称	SmilChr01G002253
描述	putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	39169249 - 39176589 / `+`

ID 对照

NCBI Gene ID	`LOC131014823`
GeneID	`131014823`
locus_tag	`-`
NCBI Name	`LOC131014823`
原始查询	`LOC131014823`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D
产物	putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D
Arabidopsis	`AT1G34260` (FAB1D) FORMS APLOID AND BINUCLEATE CELLS 1A [Source:NCBI gene (formerly Entrezgene);Acc:840326] identity=44.5; qcov=0.936; evalue=0; confidence=medium
Rice	`Os04g0691900` - identity=36; qcov=0.662; evalue=1.67e-152; confidence=medium
GO	GO:0000285 (1-phosphatidylinositol-3-phosphate 5-kinase activity); GO:0005524 (ATP binding); GO:0010008 (endosome membrane); GO:0046854 (phosphatidylinositol phosphate biosynthetic process)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00118 (Cpn60_TCP1); PF01504 (PIP5K)
InterPro	-
eggNOG	-
NR	GeneID:131014823

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.40000	`XP_057798907.1`
2	Cell membrane	细胞膜	0.40000	`XP_057798907.1`
3	Cytoplasm	细胞质	0.20000	`XP_057798907.1`
4	Cytosol	细胞质基质	0.20000	`XP_057798907.1`
5	Chromosome	染色体	0.00000	`XP_057798907.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:39170637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:39171057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,D4
`Chr1:39171080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B53,B93,C13
`Chr1:39171229`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B70,C65
`Chr1:39172399`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr1:39172553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B53,B93,C13
`Chr1:39172612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr1:39172690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C10,C32,C68,D10
`Chr1:39172923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:39172953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C56
`Chr1:39173047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B18,B76
`Chr1:39173199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798907.1

1479 aa

740

1479

Cpn60_TCP1

PIP5K

PF00118 Cpn60_TCP1 210-446 aa PF01504 PIP5K 1198-1362 aa PF01504 PIP5K 1364-1416 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798907.1`	Pfam	`PF00118`	Cpn60_TCP1	Family	210	446	1.1e-20	74.5	TCP-1/cpn60 chaperonin family
`XP_057798907.1`	Pfam	`PF01504`	PIP5K	Family	1198	1362	1.1e-41	143.8	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057798907.1`	Pfam	`PF01504`	PIP5K	Family	1364	1416	1.1e-41	143.8	Phosphatidylinositol-4-phosphate 5-Kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942924.1
CAGTTGAATAAAATTCGAATTTTTGTTGTTGTGAGCAGCGAAGAACTGGCTGTGGGTCCCATTCATCTTTGGACAATCTTTCAAATTTTTCTTTATTACTTCTCCTTCTCAAAATCTTTGTTCATGCCGAGCTCGTTCACAAAATCTTTTGCTTTTTCAATGTCCCCTTTCTCAGCGACTTGAAATTCTCGAATGTCCAAGATTTTGGAATCTTTATGTCTTGAACAAAGGCACGTCATCTGGGATATGAAGATTGACGA...

CDS

1 records

下载 CDS FASTA

LOC131014823
ATGCCATCGCTCATTCCTAGTGCTTCTTTGGAAAGCAGCCATAGTTCTTTATCAAGTTGCAGTGATATTTCATCAGACGTTAACTTTTATGACCGGCCGTACGTGGAAGACAGCAGTCAAGAAGATGTTTCCCTAAAAGGGCGTCTTGATAACTCAGACCTATCAGTTAAAACAAATGGTTTTCATCAAAATGGTAATTTGGCGAAACAACATATTTTGGAAGTTGGAAGGATCAATAGTTTTGGGAGCCTTAGAGAGGT...

Protein

1 records

下载 Protein FASTA

XP_057798907.1
MPSLIPSASLESSHSSLSSCSDISSDVNFYDRPYVEDSSQEDVSLKGRLDNSDLSVKTNGFHQNGNLAKQHILEVGRINSFGSLREVETAEVPRGTDSNVRRVSSSSDGSAASLPNDEGNAEFWLPPEPEDWEDDVIGRVASYDDDDDECGDGATWARPSSLSSFEEEGSASYKFREEKVKAMDNVKNGKFMALVSQLVKSVGVNSSRGQGENWVDIVTSLSWEAAAFVKPNTHEGKAMDPDGYVKIKCIATGLRSQSQV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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