当前解析结果
SmilChr01G000428| 统一新 Gene ID | SmilChr01G000428 |
|---|---|
| 名称 | SmilChr01G000428 |
| 描述 | uncharacterized SmilChr01G000428 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 8572479 - 8580366 / - |
| NCBI Gene ID | LOC131014828 |
|---|---|
| GeneID | 131014828 |
| locus_tag | - |
| NCBI Name | LOC131014828 |
| 原始查询 | LOC131014828 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger MYM-type-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826552]; symbol=AT4G09660; hit=AT4G09660; species=arabidopsis; confidence=medium |
| 产物 | zinc finger MYM-type-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826552]; symbol=AT4G09660; hit=AT4G09660; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G09660 (AT4G09660)zinc finger MYM-type-like protein [Source:NCBI gene (formerly Entrezgene);Acc:826552] identity=36.6; qcov=0.872; evalue=5.35e-52; confidence=medium |
| Rice | Os02g0301400- identity=36.1; qcov=0.295; evalue=8.58e-14; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014828 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057798956.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057798956.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057798956.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798956.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798956.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:8572482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C60,C82 |
Chr1:8576814 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C19 |
Chr1:8576814 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:8576967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr1:8577017 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B85,C68 |
Chr1:8577017 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B85,C68 |
Chr1:8577024 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr1:8577029 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B17 |
Chr1:8577029 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B17 |
Chr1:8577063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B65,C52 |
Chr1:8577075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:8577105 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C3,D8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。