当前解析结果
SmilChr03G003975| 统一新 Gene ID | SmilChr03G003975 |
|---|---|
| 名称 | SmilChr03G003975 |
| 描述 | ATPase GET3B-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 58772403 - 58775938 / - |
| NCBI Gene ID | LOC131014833 |
|---|---|
| GeneID | 131014833 |
| locus_tag | - |
| NCBI Name | LOC131014833 |
| 原始查询 | LOC131014833 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATPase GET3B-like |
| 产物 | ATPase GET3B-like |
| Arabidopsis | AT3G10350 (AT3G10350)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820197] identity=81; qcov=0.922; evalue=0; confidence=high |
| Rice | Os02g0745000- identity=82.6; qcov=0.642; evalue=1.26e-153; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0006620 (post-translational protein targeting to endoplasmic reticulum membrane); GO:0016887 (ATP hydrolysis activity); GO:0043529 (GET complex) |
| KEGG | smil03060 (Protein export - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01656 (CbiA); PF02374 (ArsA_ATPase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014833 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057798930.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057798930.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057798930.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057798930.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057798930.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:58773237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,D10 |
Chr3:58773533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B100,B44,B77,C71 |
Chr3:58773696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:58773718 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C18,D10 |
Chr3:58773871 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B100,B44,B77,C71 |
Chr3:58774404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:58774698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C76,C81 |
Chr3:58774864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr3:58775170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr3:58775176 |
A |
AT |
1bp_insertion | frameshift_variant | 18 | B103,B106,B34,B36,B38,B39,B65,B74,B77,C12,C13,C15,C51,C54,C67,D1,D4,D6 |
Chr3:58775191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr3:58775192 |
C |
CA |
1bp_insertion | frameshift_variant | 112 | A1,A14,A16,A2,A20,A25,A3,A6,A7,B103,B104,B106,B107,B110,B112,B113,B121,B126,B130,B133,B136,B138,B139,B15,B16,B17,B18,B2,B20,B25,B27,B28,B31,B34,B36,B38,B39,B42,B43,B45,B46,B48,B51,B58,B6,B60,B61,B63,B65,B66,B67,B68,B69,B73,B75,B77,B80,B81,B82,B84,B85,B86,B87,B97,C1,C10,C11,C12,C13,C15,C16,C18,C2,C22,C25,C26,C27,C30,C32,C35,C36,C41,C42,C43,C44,C45,C47,C51,C54,C55,C56,C59,C60,C62,C63,C64,C66,C67,C68,C69,C70,C78,C83,C84,C85,C86,D1,D3,D4,D6,D7,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798930.1PF02374
ArsA_ATPase 88-408 aa
PF01656
CbiA 92-291 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798930.1 |
Pfam | PF02374 |
ArsA_ATPase | Domain | 88 | 408 | 9.6e-72 | 242.5 | Anion-transporting ATPase |
XP_057798930.1 |
Pfam | PF01656 |
CbiA | Domain | 92 | 291 | 1.6e-08 | 35.3 | CobQ/CobB/MinD/ParA nucleotide binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。