Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003981`

染色体: Chr03 坐标: 58821105-58823702 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003981`
名称	SmilChr03G003981
描述	uncharacterized SmilChr03G003981
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	58821105 - 58823702 / `+`

ID 对照

NCBI Gene ID	`LOC131014838`
GeneID	`131014838`
locus_tag	`-`
NCBI Name	`LOC131014838`
原始查询	`LOC131014838`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SIP6; symbol=SIP6; hit=Os03g0288600; species=rice; confidence=weak
产物	SIP6; symbol=SIP6; hit=Os03g0288600; species=rice; confidence=weak
Arabidopsis	`AT5G50840` (AT5G50840) alpha-taxilin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835156] identity=61.3; qcov=0.173; evalue=2.76e-19; confidence=weak
Rice	`Os03g0288600` (SIP6) - identity=62.5; qcov=0.148; evalue=1.3e-24; confidence=weak
GO	GO:0019905 (syntaxin binding)
KEGG	-
Pfam	PF07734 (FBA_1); PF08268 (FBA_3); PF09728 (Taxilin)
InterPro	-
eggNOG	-
NR	GeneID:131014838

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057798936.1`
2	Cytoplasm	细胞质	0.80000	`XP_057798936.1`
3	Cytosol	细胞质基质	0.20000	`XP_057798936.1`
4	Chromosome	染色体	0.00000	`XP_057798936.1`
5	Centromere	着丝粒	0.00000	`XP_057798936.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:58821294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr3:58821310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr3:58821420`	`C`	`CG`	1bp_insertion	frameshift_variant	35	A18,A19,A23,A4,B10,B106,B119,B137,B20,B26,B3,B31,B38,B39,B50,B58,B60,B62,B65,B67,B76,B8,B85,B86,B91,C13,C24,C33,C35,C45,C54,C80,C82,D10,D6
`Chr3:58821519`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:58821688`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr3:58821692`	`T`	`TAA`	2bp_insertion	frameshift_variant	7	A11,B105,B120,B3,B56,B80,C83
`Chr3:58821803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:58821875`	`T`	`TC`	1bp_insertion	frameshift_variant	7	A15,B109,B17,C1,C50,C86,D9
`Chr3:58821876`	`G`	`GC`	1bp_insertion	frameshift_variant	7	A15,B109,B17,C1,C50,C86,D9
`Chr3:58821883`	`C`	`CG`	1bp_insertion	frameshift_variant	7	A15,B109,B17,C1,C50,C86,D9
`Chr3:58821940`	`T`	`TA`	1bp_insertion	frameshift_variant	4	A15,A16,B88,C86
`Chr3:58821940`	`T`	`TA`	1bp_insertion	CDS_variant	4	A15,A16,B88,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798936.1

544 aa

272

544

FBA_3

FBA_1

Taxilin

PF08268 FBA_3 45-243 aa PF07734 FBA_1 50-212 aa PF09728 Taxilin 450-528 aa

XP_057798937.1

544 aa

272

544

FBA_3

FBA_1

Taxilin

PF08268 FBA_3 45-243 aa PF07734 FBA_1 50-212 aa PF09728 Taxilin 450-528 aa

XP_057798938.1

539 aa

270

539

FBA_3

FBA_1

Taxilin

PF08268 FBA_3 45-243 aa PF07734 FBA_1 50-212 aa PF09728 Taxilin 445-523 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798936.1`	Pfam	`PF08268`	FBA_3	Repeat	45	243	7.1e-10	39.1	F-box associated beta propeller domain
`XP_057798936.1`	Pfam	`PF07734`	FBA_1	Repeat	50	212	1.6e-15	57.7	F-box associated beta propeller domain
`XP_057798936.1`	Pfam	`PF09728`	Taxilin	Coiled-coil	450	528	4.8e-18	66.1	Myosin-like coiled-coil protein
`XP_057798937.1`	Pfam	`PF08268`	FBA_3	Repeat	45	243	7.1e-10	39.1	F-box associated beta propeller domain
`XP_057798937.1`	Pfam	`PF07734`	FBA_1	Repeat	50	212	1.6e-15	57.7	F-box associated beta propeller domain
`XP_057798937.1`	Pfam	`PF09728`	Taxilin	Coiled-coil	450	528	4.8e-18	66.1	Myosin-like coiled-coil protein
`XP_057798938.1`	Pfam	`PF08268`	FBA_3	Repeat	45	243	6.9e-10	39.2	F-box associated beta propeller domain
`XP_057798938.1`	Pfam	`PF07734`	FBA_1	Repeat	50	212	1.6e-15	57.7	F-box associated beta propeller domain
`XP_057798938.1`	Pfam	`PF09728`	Taxilin	Coiled-coil	445	523	2.1e-18	67.3	Myosin-like coiled-coil protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942953.1
CCAACTGAATTAAACACATGTGTCAATCTATCTCAAAACTACAATTCTTTTTGGGGGCGAAGGTTAATTTCCGGCGCATGTAATTTAATTGCCTCCTCTTCGAAATCCATGAACTTTTGATCGACGATGAAGAATTCGGACAACAAACGGCTTCTTGTGATACGTAACCGTGGACAGTTTGGTAAGTATGAATTTACCGCTCTTTGTCCGCGAGATTTATCTGAAATCCGTGACGAAAGTTTCGAACTTCCTTTTCTGTA...

XM_057942954.1
CCAACTGAATTAAACACATGTGTCAATCTATCTCAAAACTACAATTCTTTTTGGGGGCGAAGGTTAATTTCCGGCGCATGTAATTTAATTGCCTCCTCTTCGAAATCCATGAACTTTTGATCGACGATGAAGAATTCGGACAACAAACGGCTTCTTGTGATACGTAACCGTGGACAGTTTGGTAAGTATGAATTTACCGCTCTTTGTCCGCGAGATTTATCTGAAATCCGTGACGAAAGTTTCGAACTTCCTTTTCTGTA...

CDS

3 records

下载 CDS FASTA

LOC131014838
ATGAAGAATTCGGACAACAAACGGCTTCTTGTGATACGTAACCGTGGACAGTTTGGTAAGTATGAATTTACCGCTCTTTGTCCGCGAGATTTATCTGAAATCCGTGACGAAAGTTTCGAACTTCCTTTTCTGTATCCAAGGTCAGTAATTCATTTTAATAGTTGCCGGGATTTGATATGTATCTACGAACTTGAAGGCCATATTTATGTTTTGAACCCCACAACCAAACAGTGTCTGTTGTTTCCTACCGAGGAAGTCTC...

Protein

3 records

下载 Protein FASTA

XP_057798936.1
MKNSDNKRLLVIRNRGQFGKYEFTALCPRDLSEIRDESFELPFLYPRSVIHFNSCRDLICIYELEGHIYVLNPTTKQCLLFPTEEVSQFDEKQTLLLGACIGYDSKCDDYKILRVCERVIMAPSYRTLNTYQLYSFKEDSWNQIDRVANPDDTSKSSFQAAFVRGKCYWCVALDRIESWDCSEKTLSYIDFPPERRITRYGQLVQINGGDSLGFVGFSDRDPKVGHDYEVWVWSEELKRWDRQFSVSLGGAVGRPVGTIF...

XP_057798937.1
MKNSDNKRLLVIRNRGQFGKYEFTALCPRDLSEIRDESFELPFLYPRSVIHFNSCRDLICIYELEGHIYVLNPTTKQCLLFPTEEVSQFDEKQTLLLGACIGYDSKCDDYKILRVCERVIMAPSYRTLNTYQLYSFKEDSWNQIDRVANPDDTSKSSFQAAFVRGKCYWCVALDRIESWDCSEKTLSYIDFPPERRITRYGQLVQINGGDSLGFVGFSDRDPKVGHDYEVWVWSEELKRWDRQFSVSLGGAVGRPVGTIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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