Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004010`

染色体: Chr03 坐标: 59096294-59100515 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004010`
名称	SmilChr03G004010
描述	uncharacterized SmilChr03G004010
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59096294 - 59100515 / `+`

ID 对照

NCBI Gene ID	`LOC131014867`
GeneID	`131014867`
locus_tag	`-`
NCBI Name	`LOC131014867`
原始查询	`LOC131014867`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-taxilin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835156]; symbol=AT5G50840; hit=AT5G50840; species=arabidopsis; confidence=high
产物	alpha-taxilin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835156]; symbol=AT5G50840; hit=AT5G50840; species=arabidopsis; confidence=high
Arabidopsis	`AT5G50840` (AT5G50840) alpha-taxilin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835156] identity=59.3; qcov=1.02; evalue=5.07e-139; confidence=high
Rice	`Os03g0288600` (SIP6) - identity=50.5; qcov=1.08; evalue=1.26e-126; confidence=high
GO	GO:0019905 (syntaxin binding)
KEGG	-
Pfam	PF09728 (Taxilin)
InterPro	-
eggNOG	-
NR	GeneID:131014867

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798981.1`
2	Cytosol	细胞质基质	1.00000	`XP_057798981.1`
3	Centrosome	中心体	0.60000	`XP_057798981.1`
4	Golgi apparatus	高尔基体	0.40000	`XP_057798981.1`
5	Cell projection	细胞突起	0.40000	`XP_057798981.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59096668`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B4,D6
`Chr3:59096669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:59096816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:59096817`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:59096820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B126,B24,C36
`Chr3:59097436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B111,C40
`Chr3:59097707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:59099440`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr3:59099595`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,C13
`Chr3:59099607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B126,B24,C36
`Chr3:59100077`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr3:59100209`	`C`	`CA`	1bp_insertion	frameshift_variant	129	A1,A10,A11,A18,A19,A2,A20,A21,A23,A24,A4,A5,A6,A7,A9,B1,B102,B104,B105,B108,B11,B111,B113,B115,B120,B121,B122,B124,B125,B128,B129,B13,B131,B133,B134,B135,B137,B138,B16,B18,B2,B20,B21,B24,B27,B28,B3,B34,B35,B39,B41,B47,B49,B50,B52,B53,B55,B57,B6,B61,B63,B64,B68,B69,B73,B78,B79,B8,B80,B83,B87,B91,B93,B95,B97,B98,C10,C12,C13,C14,C15,C16,C18,C19,C2,C21,C23,C24,C26,C28,C30,C32,C33,C36,C37,C38,C4,C40,C41,C43,C44,C47,C48,C51,C52,C55,C56,C57,C58,C59,C6,C61,C62,C64,C65,C66,C68,C72,C73,C78,C79,C83,C85,C86,C9,D10,D2,D5,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798981.1

403 aa

202

403

Taxilin

PF09728 Taxilin 123-387 aa

XP_057798982.1

403 aa

202

403

Taxilin

PF09728 Taxilin 123-387 aa

XP_057798983.1

403 aa

202

403

Taxilin

PF09728 Taxilin 123-387 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798981.1`	Pfam	`PF09728`	Taxilin	Coiled-coil	123	387	9.6e-73	245.7	Myosin-like coiled-coil protein
`XP_057798982.1`	Pfam	`PF09728`	Taxilin	Coiled-coil	123	387	9.6e-73	245.7	Myosin-like coiled-coil protein
`XP_057798983.1`	Pfam	`PF09728`	Taxilin	Coiled-coil	123	387	9.6e-73	245.7	Myosin-like coiled-coil protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942999.1
CTTATATGCAATTGACACATAAATTGTACACTTGGCATCATTGCTTGTACTTCGGAATCAACTTTTCTTTTGCAGCGCTCTTGAGTGCTTTTCCTCTCTCTCTCCATTAATATCCTCTCGCTTCGAGTCATTTTGCAAAGCAGAGACCTCGTATCTGAAGGTGCAGGTGTAAAATGGGGGACCCGAACCCGAGCCCGAGCCCGAACCCGGAGGCGAATCAGCTTCCAGAAGCCGACTCGCTGCCCGATGGGTTTGTCGAA...

XM_057943000.1
GGCATCATTGCTTGTACTTCGGAATCAACTTTTCTTTTGCAGCGCTCTTGAGTGCTTTTCCTCTCTCTCTCCATTAATATCCTCTCGCTTCGAGTCATTTTGCAAAGCAGAGACCTCGTATCTTTGTAGGAAGGTGCAGGTGTAAAATGGGGGACCCGAACCCGAGCCCGAGCCCGAACCCGGAGGCGAATCAGCTTCCAGAAGCCGACTCGCTGCCCGATGGGTTTGTCGAATCCTCTCCGGCGGAAGCAGTGGTAGAT...

CDS

3 records

下载 CDS FASTA

LOC131014867
ATGGGGGACCCGAACCCGAGCCCGAGCCCGAACCCGGAGGCGAATCAGCTTCCAGAAGCCGACTCGCTGCCCGATGGGTTTGTCGAATCCTCTCCGGCGGAAGCAGTGGTAGATTACAAGGAGGAGAAACTGCTGGAGCCCGGCTCTCGGCCCGAAGTTGTGATAGAAGATGGCGGTTCGTCATTGGGTAAATTGGTCGAGCACGTGGCGGATCAAACTCAATCAGCGGCTGCAGCGAATGCCAACCCAACTCAAGGCGA...

Protein

3 records

下载 Protein FASTA

XP_057798981.1
MGDPNPSPSPNPEANQLPEADSLPDGFVESSPAEAVVDYKEEKLLEPGSRPEVVIEDGGSSLGKLVEHVADQTQSAAAANANPTQGDGNAKEKSIEGAETHAVTSVGIDGTGSTENNKKEAPEVKRKVKRTFKSEKEFLEFTLKYQQVITERDSAVAVRDKLESLCRELQRQNKMLMDECKRVSKEGQNLRLDLSNKFQDAIKEVSCKLEEQKDECIAQLKENEMLKIKLKQLVEQYTLSEQQHAQQLKQKALELQLSDL...

XP_057798982.1
MGDPNPSPSPNPEANQLPEADSLPDGFVESSPAEAVVDYKEEKLLEPGSRPEVVIEDGGSSLGKLVEHVADQTQSAAAANANPTQGDGNAKEKSIEGAETHAVTSVGIDGTGSTENNKKEAPEVKRKVKRTFKSEKEFLEFTLKYQQVITERDSAVAVRDKLESLCRELQRQNKMLMDECKRVSKEGQNLRLDLSNKFQDAIKEVSCKLEEQKDECIAQLKENEMLKIKLKQLVEQYTLSEQQHAQQLKQKALELQLSDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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