当前解析结果
SmilChr03G004053| 统一新 Gene ID | SmilChr03G004053 |
|---|---|
| 名称 | SmilChr03G004053 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 59483245 - 59488674 / - |
| NCBI Gene ID | LOC131014882 |
|---|---|
| GeneID | 131014882 |
| locus_tag | - |
| NCBI Name | LOC131014882 |
| 原始查询 | LOC131014882 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=27; qcov=0.971; evalue=4.74e-68; confidence=low |
| Rice | Os09g0479500- identity=27.5; qcov=0.996; evalue=1.76e-77; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014882 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057799002.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057799002.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799002.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799002.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799002.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:59485769 |
AAT |
A |
2bp_deletion | frameshift_variant | 9 | A20,B108,B109,B110,B90,C31,C52,C54,C80 |
Chr3:59485773 |
C |
CGA |
2bp_insertion | frameshift_variant | 9 | A20,B108,B109,B110,B90,C31,C52,C54,C80 |
Chr3:59485808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B18,B23,B31,C47 |
Chr3:59485826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B62,B7,B75,C14,D9 |
Chr3:59485838 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B11,B136,C23,C42 |
Chr3:59485843 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | A1,B11,B136,C23,C42 |
Chr3:59485843 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B11,B136,C23,C42 |
Chr3:59485899 |
C |
CT |
1bp_insertion | frameshift_variant | 136 | A1,A14,A18,A2,A20,A22,A24,A25,A4,A5,A6,A7,B10,B100,B101,B102,B106,B107,B108,B109,B110,B111,B112,B113,B114,B117,B118,B119,B12,B121,B123,B125,B126,B128,B13,B131,B134,B136,B138,B14,B15,B16,B2,B25,B26,B3,B30,B31,B33,B42,B43,B44,B46,B47,B48,B49,B51,B52,B55,B57,B59,B6,B60,B61,B63,B66,B7,B70,B72,B74,B76,B8,B80,B9,B90,B91,B92,B93,B95,B97,B98,C12,C13,C15,C18,C19,C2,C20,C21,C22,C23,C25,C26,C27,C28,C29,C3,C31,C32,C34,C35,C37,C39,C40,C42,C44,C49,C5,C50,C51,C52,C53,C54,C55,C58,C61,C63,C67,C68,C71,C72,C73,C77,C79,C8,C80,C81,C87,C9,D1,D11,D2,D3,D6,D8,D9 |
Chr3:59485906 |
GC |
G |
1bp_deletion | frameshift_variant | 133 | A1,A14,A18,A2,A20,A22,A24,A25,A4,A5,A6,A7,B10,B100,B101,B102,B106,B107,B108,B109,B110,B111,B112,B113,B114,B117,B118,B119,B12,B121,B123,B125,B126,B128,B13,B131,B134,B136,B138,B14,B15,B16,B2,B25,B26,B3,B30,B31,B33,B42,B43,B44,B46,B47,B48,B49,B51,B52,B55,B57,B59,B6,B60,B61,B63,B66,B7,B70,B72,B74,B76,B8,B80,B9,B91,B93,B95,B97,B98,C12,C13,C18,C19,C2,C20,C21,C22,C23,C25,C26,C27,C28,C29,C3,C31,C32,C34,C35,C37,C39,C40,C42,C44,C49,C5,C50,C51,C52,C53,C54,C55,C58,C61,C63,C67,C68,C71,C72,C73,C77,C79,C8,C80,C81,C87,C9,D1,D11,D2,D3,D6,D8,D9 |
Chr3:59485968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C19,C48,C82 |
Chr3:59486066 |
AGG |
* |
2bp_deletion | CDS_variant | 1 | B65 |
Chr3:59486115 |
C |
CA |
1bp_insertion | frameshift_variant | 119 | A11,A13,A14,A18,A19,A23,A24,A3,A5,A7,B100,B104,B106,B107,B109,B110,B113,B117,B118,B12,B120,B125,B127,B129,B13,B132,B134,B135,B137,B138,B140,B16,B19,B20,B27,B28,B3,B34,B36,B40,B41,B42,B43,B47,B49,B5,B50,B52,B53,B55,B57,B58,B59,B6,B61,B62,B63,B70,B71,B76,B77,B78,B79,B80,B82,B84,B86,B93,B94,B97,B99,C10,C11,C12,C14,C16,C17,C19,C24,C25,C26,C27,C28,C3,C31,C32,C35,C4,C43,C49,C5,C50,C52,C53,C55,C57,C59,C61,C63,C64,C65,C66,C68,C69,C73,C74,C77,C78,C8,C80,C81,D10,D2,D3,D4,D5,D7,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799002.1PF00931
NB-ARC 142-329 aa
PF23559
WHD_DRP 408-481 aa
XP_057799003.1PF00931
NB-ARC 142-329 aa
PF23559
WHD_DRP 408-481 aa
XP_057799004.1PF00931
NB-ARC 142-329 aa
PF23559
WHD_DRP 408-481 aa
XP_057799005.1PF00931
NB-ARC 142-329 aa
PF23559
WHD_DRP 408-481 aa
XP_057799006.1PF00931
NB-ARC 142-329 aa
PF23559
WHD_DRP 408-481 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799002.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 329 | 4.8e-39 | 134.4 | NB-ARC domain |
XP_057799002.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 408 | 481 | 1e-19 | 71.0 | Disease resistance protein Winged helix domain |
XP_057799003.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 329 | 4.8e-39 | 134.4 | NB-ARC domain |
XP_057799003.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 408 | 481 | 1e-19 | 71.0 | Disease resistance protein Winged helix domain |
XP_057799004.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 329 | 4.8e-39 | 134.4 | NB-ARC domain |
XP_057799004.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 408 | 481 | 1e-19 | 71.0 | Disease resistance protein Winged helix domain |
XP_057799005.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 329 | 4.8e-39 | 134.4 | NB-ARC domain |
XP_057799005.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 408 | 481 | 1e-19 | 71.0 | Disease resistance protein Winged helix domain |
XP_057799006.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 329 | 4.8e-39 | 134.4 | NB-ARC domain |
XP_057799006.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 408 | 481 | 1e-19 | 71.0 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。