当前解析结果
SmilChr03G004062| 统一新 Gene ID | SmilChr03G004062 |
|---|---|
| 名称 | SmilChr03G004062 |
| 描述 | ABC transporter G family member 14 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 59589219 - 59592862 / + |
| NCBI Gene ID | LOC131014890 |
|---|---|
| GeneID | 131014890 |
| locus_tag | - |
| NCBI Name | LOC131014890 |
| 原始查询 | LOC131014890 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 14 |
| 产物 | ABC transporter G family member 14 |
| Arabidopsis | AT1G31770 (ABCG14)ATP-binding cassette 14 [Source:NCBI gene (formerly Entrezgene);Acc:840064] identity=73.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os08g0167000 (OsABCG18)- identity=57.4; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF12698 (ABC2_membrane_3); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014890 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057799017.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057799017.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057799017.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799017.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799017.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:59590241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B99,C53 |
Chr3:59590273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr3:59590305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr3:59590518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr3:59591451 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr3:59592048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B79,C40,C65,D5 |
Chr3:59592231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr3:59592459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:59592553 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A24 |
Chr3:59592553 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A24 |
Chr3:59592558 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,C78 |
Chr3:59592576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799017.1PF00005
ABC_tran 80-230 aa
PF19055
ABC2_membrane_7 259-391 aa
PF01061
ABC2_membrane 388-594 aa
PF12698
ABC2_membrane_3 440-644 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799017.1 |
Pfam | PF00005 |
ABC_tran | Domain | 80 | 230 | 4e-27 | 96.2 | ABC transporter |
XP_057799017.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 259 | 391 | 2.1e-15 | 57.2 | ABC-2 type transporter |
XP_057799017.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 388 | 594 | 1.7e-42 | 146.1 | ABC-2 type transporter |
XP_057799017.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 440 | 644 | 7.3e-09 | 35.9 | ABC-2 family transporter protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。