Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004064`

染色体: Chr03 坐标: 59602902-59607842 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004064`
名称	SmilChr03G004064
描述	ABC transporter E family member 2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59602902 - 59607842 / `+`

ID 对照

NCBI Gene ID	`LOC131014894`
GeneID	`131014894`
locus_tag	`-`
NCBI Name	`LOC131014894`
原始查询	`LOC131014894`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter E family member 2
产物	ABC transporter E family member 2
Arabidopsis	`AT4G19210` (ABCE2) RNAse l inhibitor protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:827661] identity=92.2; qcov=1; evalue=0; confidence=high
Rice	`Os11g0546000` (OsABCE2) - identity=92; qcov=0.995; evalue=0; confidence=high
GO	GO:0000054 (ribosomal subunit export from nucleus); GO:0005506 (iron ion binding); GO:0005524 (ATP binding); GO:0006413 (translational initiation); GO:0006415 (translational termination); GO:0016887 (ATP hydrolysis activity); GO:0043024 (ribosomal small subunit binding)
KEGG	-
Pfam	PF00005 (ABC_tran); PF00037 (Fer4); PF04068 (Fer4_RLI); PF12837 (Fer4_6)
InterPro	-
eggNOG	-
NR	GeneID:131014894

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057799023.1`
2	Cytosol	细胞质基质	1.00000	`XP_057799023.1`
3	Nucleus	细胞核	0.40000	`XP_057799023.1`
4	Nucleoplasm	核质	0.40000	`XP_057799023.1`
5	Chromosome	染色体	0.00000	`XP_057799023.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59605356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:59605597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:59606088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:59606140`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:59606414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B124,C12,D5
`Chr3:59607334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B124,C12,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799023.1

606 aa

303

606

Fer4_RLI

Fer4_6

Fer4

ABC_tran

PF04068 Fer4_RLI 7-37 aa PF12837 Fer4_6 50-71 aa PF00037 Fer4 50-72 aa PF00005 ABC_tran 103-245 aa PF00005 ABC_tran 366-496 aa

XP_057799024.1

606 aa

303

606

Fer4_RLI

Fer4_6

Fer4

ABC_tran

PF04068 Fer4_RLI 7-37 aa PF12837 Fer4_6 50-71 aa PF00037 Fer4 50-72 aa PF00005 ABC_tran 103-245 aa PF00005 ABC_tran 366-496 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799023.1`	Pfam	`PF04068`	Fer4_RLI	Family	7	37	3.6e-13	49.7	Possible Fer4-like domain in RNase L inhibitor, RLI
`XP_057799023.1`	Pfam	`PF12837`	Fer4_6	Domain	50	71	1.5e-06	28.5	4Fe-4S binding domain
`XP_057799023.1`	Pfam	`PF00037`	Fer4	Domain	50	72	2.5e-08	34.1	4Fe-4S binding domain
`XP_057799023.1`	Pfam	`PF00005`	ABC_tran	Domain	103	245	9e-38	130.7	ABC transporter
`XP_057799023.1`	Pfam	`PF00005`	ABC_tran	Domain	366	496	9e-38	130.7	ABC transporter
`XP_057799024.1`	Pfam	`PF04068`	Fer4_RLI	Family	7	37	3.6e-13	49.7	Possible Fer4-like domain in RNase L inhibitor, RLI
`XP_057799024.1`	Pfam	`PF12837`	Fer4_6	Domain	50	71	1.5e-06	28.5	4Fe-4S binding domain
`XP_057799024.1`	Pfam	`PF00037`	Fer4	Domain	50	72	2.5e-08	34.1	4Fe-4S binding domain
`XP_057799024.1`	Pfam	`PF00005`	ABC_tran	Domain	103	245	9e-38	130.7	ABC transporter
`XP_057799024.1`	Pfam	`PF00005`	ABC_tran	Domain	366	496	9e-38	130.7	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943040.1
ATACTAGTAATAAACAGTGATTTAGTCGAAAAATAGAAAACAGAAAATAGTAGTAATAAAAAAACCCTTCTTTATTCCCTCTTGGAACCCTAGCACCGTTTATCTTTCTTCTGCGTGTGTCTGCCATCCTCTCTCTCTCCCGAATCTCGCAGCCCGCAGAGACCAGTTTGAATAGAGAGAGATGTCGGATCAGAAACTGACGCGTATCGCTATAGTGAGCTCCGACAAGTGCAAGCCTAAGAAATGTCGTCAGGAGTGCA...

XM_057943041.1
CAGAAAATAGTAGTAATAAAAAAACCCTTCTTTATTCCCTCTTGGAACCCTAGCACCGTTTATCTTTCTTCTGCGTGTGTCTGCCATCCTCTCTCTCTCCCGAATCTCGCAGCCCGCAGTTTGAATAGAGAGAGATGTCGGATCAGAAACTGACGCGTATCGCTATAGTGAGCTCCGACAAGTGCAAGCCTAAGAAATGTCGTCAGGAGTGCAAAAAGAGTTGCCCTGTTGTCAAAACAGGTAAACTTTGCATAGAAGTG...

CDS

2 records

下载 CDS FASTA

LOC131014894
ATGTCGGATCAGAAACTGACGCGTATCGCTATAGTGAGCTCCGACAAGTGCAAGCCTAAGAAATGTCGTCAGGAGTGCAAAAAGAGTTGCCCTGTTGTCAAAACAGGTAAACTTTGCATAGAAGTGACTCCTGCATCCAAGATAGCTTTCATCTCAGAGGAGTTGTGTATTGGATGTGGTATTTGTGTGAAGAAATGCCCATTTGAAGCAATTCAGATTATTAATCTACCAAAAGACTTGGACAAGGATACAACCCATCG...

Protein

2 records

下载 Protein FASTA

XP_057799023.1
MSDQKLTRIAIVSSDKCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLSQKDERDMKQELAADLELIQVMDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV...

XP_057799024.1
MSDQKLTRIAIVSSDKCKPKKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLSQKDERDMKQELAADLELIQVMDRNVGDLSGGELQRFAIAVVAVQNAEIYMFDEPSSYLDVKQRLKAAQVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器