当前解析结果
SmilChr03G004098| 统一新 Gene ID | SmilChr03G004098 |
|---|---|
| 名称 | SmilChr03G004098 |
| 描述 | LRR receptor-like serine/threonine-protein kinase FEI 2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 59859530 - 59869953 / + |
| NCBI Gene ID | LOC131014897 |
|---|---|
| GeneID | 131014897 |
| locus_tag | - |
| NCBI Name | LOC131014897 |
| 原始查询 | LOC131014897 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LRR receptor-like serine/threonine-protein kinase FEI 2 |
| 产物 | LRR receptor-like serine/threonine-protein kinase FEI 2 |
| Arabidopsis | AT1G31420 (FEI1)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:840032] identity=74.2; qcov=0.959; evalue=0; confidence=high |
| Rice | Os03g0266800 (OsBAK1-10)- identity=71.2; qcov=0.973; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014897 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799027.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799027.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799027.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799027.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799027.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:59861293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr3:59861738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr3:59861798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,C78 |
Chr3:59862211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B6,B60,B76 |
Chr3:59867168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C34 |
Chr3:59867325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,A20,B23,B89,C41 |
Chr3:59867436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,C39,C56 |
Chr3:59867475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B94,C13 |
Chr3:59867481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B136,B21,B64,C31 |
Chr3:59867614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,B33,C39,C56 |
Chr3:59868085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr3:59869377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799027.1PF08263
LRRNT_2 28-67 aa
PF00560
LRR_1 97-118 aa
PF00560
LRR_1 120-142 aa
PF13855
LRR_8 120-177 aa
PF00560
LRR_1 144-166 aa
PF00069
Pkinase 308-571 aa
PF07714
PK_Tyr_Ser-Thr 309-573 aa
XP_057799028.1PF08263
LRRNT_2 28-67 aa
PF00560
LRR_1 97-118 aa
PF00560
LRR_1 120-142 aa
PF13855
LRR_8 120-177 aa
PF00560
LRR_1 144-166 aa
PF00069
Pkinase 308-571 aa
PF07714
PK_Tyr_Ser-Thr 309-573 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799027.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 67 | 1.2e-11 | 45.4 | Leucine rich repeat N-terminal domain |
XP_057799027.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 118 | 9.5e-11 | 40.4 | Leucine Rich Repeat |
XP_057799027.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 120 | 142 | 9.5e-11 | 40.4 | Leucine Rich Repeat |
XP_057799027.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 120 | 177 | 2.9e-07 | 30.9 | Leucine rich repeat |
XP_057799027.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 166 | 9.5e-11 | 40.4 | Leucine Rich Repeat |
XP_057799027.1 |
Pfam | PF00069 |
Pkinase | Domain | 308 | 571 | 1.8e-45 | 156.1 | Protein kinase domain |
XP_057799027.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 309 | 573 | 1.8e-42 | 146.2 | Protein tyrosine and serine/threonine kinase |
XP_057799028.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 67 | 1.2e-11 | 45.4 | Leucine rich repeat N-terminal domain |
XP_057799028.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 118 | 9.5e-11 | 40.4 | Leucine Rich Repeat |
XP_057799028.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 120 | 142 | 9.5e-11 | 40.4 | Leucine Rich Repeat |
XP_057799028.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 120 | 177 | 2.9e-07 | 30.9 | Leucine rich repeat |
XP_057799028.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 166 | 9.5e-11 | 40.4 | Leucine Rich Repeat |
XP_057799028.1 |
Pfam | PF00069 |
Pkinase | Domain | 308 | 571 | 1.8e-45 | 156.1 | Protein kinase domain |
XP_057799028.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 309 | 573 | 1.8e-42 | 146.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。