Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004085`

染色体: Chr03 坐标: 59760005-59764549 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004085`
名称	SmilChr03G004085
描述	uncharacterized SmilChr03G004085
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59760005 - 59764549 / `-`

ID 对照

NCBI Gene ID	`LOC131014898`
GeneID	`131014898`
locus_tag	`-`
NCBI Name	`LOC131014898`
原始查询	`LOC131014898`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OsRFP; symbol=OsRFP; hit=Os05g0389600; species=rice; confidence=medium
产物	OsRFP; symbol=OsRFP; hit=Os05g0389600; species=rice; confidence=medium
Arabidopsis	`AT5G45290` (AT5G45290) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834565] identity=59.7; qcov=0.523; evalue=4.34e-100; confidence=medium
Rice	`Os05g0389600` (OsRFP) - identity=55; qcov=0.549; evalue=3.56e-100; confidence=medium
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131014898

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057799029.1`
2	Nucleus	细胞核	0.60000	`XP_057799029.1`
3	Cytosol	细胞质基质	0.20000	`XP_057799029.1`
4	Chromosome	染色体	0.00000	`XP_057799029.1`
5	Centromere	着丝粒	0.00000	`XP_057799029.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59760413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr3:59760431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:59760467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr3:59761153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:59761451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B7
`Chr3:59761458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B4,B90,B92,C82
`Chr3:59762592`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,B132,C26
`Chr3:59762627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr3:59762668`	`G`	`A`	EMS_canonical_SNV	stop_gained	20	A1,A15,A7,A8,B10,B100,B129,B137,B16,B17,B29,B51,B59,B77,B80,C22,C24,C32,C68,D4
`Chr3:59762801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr3:59762896`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B61,B8,B82
`Chr3:59762916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B8,B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799029.1

579 aa

290

579

zf-rbx1

zf-RING_11

zf-C3HC4_2

zf-RING_2

zf-RING_UBOX

zf-C3HC4

PF12678 zf-rbx1 521-565 aa PF17123 zf-RING_11 522-550 aa PF13923 zf-C3HC4_2 522-564 aa PF13639 zf-RING_2 522-565 aa PF13445 zf-RING_UBOX 523-562 aa PF00097 zf-C3HC4 523-564 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799029.1`	Pfam	`PF12678`	zf-rbx1	Domain	521	565	2.7e-08	34.6	RING-H2 zinc finger domain
`XP_057799029.1`	Pfam	`PF17123`	zf-RING_11	Domain	522	550	6.2e-09	36.1	RING-like zinc finger
`XP_057799029.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	522	564	1.5e-07	31.8	Zinc finger, C3HC4 type (RING finger)
`XP_057799029.1`	Pfam	`PF13639`	zf-RING_2	Domain	522	565	1.2e-13	51.8	Ring finger domain
`XP_057799029.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	523	562	1.5e-05	25.6	RING-type zinc-finger
`XP_057799029.1`	Pfam	`PF00097`	zf-C3HC4	Domain	523	564	8.2e-09	35.9	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943046.1
AGCTCAATATCTCAGCAAAAATGGCGTCCCGACCAATTTCCAATTTTGAATCCCCAAATACTCAAATACTGCCACATTTCACGCTCCCCCTGGCCCCTACCCCCACCCCAACCCCCACGCCATGCCTACAATCATTAGCTGTAATCGCGGCAGATCTTCGCTAAGCATTTGTTTCAATGACGAGTGAATGAAAGAGAATGGGATTGAGCAGTAGCAAACACAATGCTGACGGCCAATTGCCTTCTTCCTCTTCTTCTTCG...

CDS

1 records

下载 CDS FASTA

LOC131014898
ATGGGATTGAGCAGTAGCAAACACAATGCTGACGGCCAATTGCCTTCTTCCTCTTCTTCTTCGTCGTCGTCTGGAGCTGCCGTTCGGAGGAGTCGATCCGGCCGAAGCAGAGTTTTGAAGTCGTCCTGTCTCCGGTCTCACTGCAATAATCGTGATGAACCGCAGGTCTCTGACGGCCAGACTGAAGAAAATGGAAAGTCTGCCTTCTGTCCAAGTGAGAATAAATTAGGCTCTTGTCCGGTTTCAGCTGAATGTTACAG...

Protein

1 records

下载 Protein FASTA

XP_057799029.1
MGLSSSKHNADGQLPSSSSSSSSSGAAVRRSRSGRSRVLKSSCLRSHCNNRDEPQVSDGQTEENGKSAFCPSENKLGSCPVSAECYRTDKAEESNDLNCINSGIQLHEWGEPSFTNNASREGNSTRVLSSRSLNPPSRFLSRLSINPGNLSFRLTRGNSLGSTRSYPAPPMGLTTSNGEEEEECADPSSSYVNRNERPQGCDFFPACFTSRSPGRQDENNASNSNPDFSGSFQDSRQLNNGQDILRNRNNTTVDCNPDLF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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