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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004073

染色体: Chr03 坐标: 59692220-59697900 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004073
名称SmilChr03G004073
描述pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向59692220 - 59697900 / +

ID 对照

NCBI Gene IDLOC131014910
GeneID131014910
locus_tag-
NCBI NameLOC131014910
原始查询LOC131014910

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g77360%2C mitochondrial-like
ArabidopsisAT1G77360 (APPR6)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844072]
identity=29.2; qcov=0.929; evalue=1.9e-63; confidence=low
RiceOs04g0520900
-
identity=45.8; qcov=0.941; evalue=2.77e-143; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131014910

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057799047.1
2 Chloroplast 叶绿体 0.20000 XP_057799047.1
3 Nucleus 细胞核 0.00000 XP_057799047.1
4 Chromosome 染色体 0.00000 XP_057799047.1
5 Centromere 着丝粒 0.00000 XP_057799047.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:59692487 C T EMS_canonical_SNV CDS_variant 1 A2
Chr3:59692539 C T EMS_canonical_SNV CDS_variant 3 A21,B117,C8
Chr3:59692586 G A EMS_canonical_SNV CDS_variant 1 B85
Chr3:59692663 G A EMS_canonical_SNV CDS_variant 2 B11,C27
Chr3:59692701 C T EMS_canonical_SNV CDS_variant 1 C45
Chr3:59692746 G A EMS_canonical_SNV CDS_variant 1 C85
Chr3:59692815 G A EMS_canonical_SNV CDS_variant 1 C27
Chr3:59693687 C T EMS_canonical_SNV CDS_variant 3 A21,B117,C8
Chr3:59693708 C T EMS_canonical_SNV CDS_variant 2 A22,B140
Chr3:59693771 G A EMS_canonical_SNV CDS_variant 1 B46
Chr3:59694185 C T EMS_canonical_SNV CDS_variant 1 B69
Chr3:59694210 G A EMS_canonical_SNV CDS_variant 1 B64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799047.1
476 aa
N
1
238
476
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF01535 PPR 91-121 aa PF23276 TPR_24 109-218 aa PF13812 PPR_3 150-204 aa PF13041 PPR_2 157-204 aa PF01535 PPR 196-221 aa PF13812 PPR_3 291-346 aa PF12854 PPR_1 296-327 aa PF13041 PPR_2 299-347 aa PF01535 PPR 303-328 aa PF01535 PPR 338-365 aa
XP_057799048.1
476 aa
N
1
238
476
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF01535 PPR 91-121 aa PF23276 TPR_24 109-218 aa PF13812 PPR_3 150-204 aa PF13041 PPR_2 157-204 aa PF01535 PPR 196-221 aa PF13812 PPR_3 291-346 aa PF12854 PPR_1 296-327 aa PF13041 PPR_2 299-347 aa PF01535 PPR 303-328 aa PF01535 PPR 338-365 aa
XP_057799049.1
476 aa
N
1
238
476
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF01535 PPR 91-121 aa PF23276 TPR_24 109-218 aa PF13812 PPR_3 150-204 aa PF13041 PPR_2 157-204 aa PF01535 PPR 196-221 aa PF13812 PPR_3 291-346 aa PF12854 PPR_1 296-327 aa PF13041 PPR_2 299-347 aa PF01535 PPR 303-328 aa PF01535 PPR 338-365 aa
XP_057799051.1
476 aa
N
1
238
476
PPR
TPR_24
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF01535 PPR 91-121 aa PF23276 TPR_24 109-218 aa PF13812 PPR_3 150-204 aa PF13041 PPR_2 157-204 aa PF01535 PPR 196-221 aa PF13812 PPR_3 291-346 aa PF12854 PPR_1 296-327 aa PF13041 PPR_2 299-347 aa PF01535 PPR 303-328 aa PF01535 PPR 338-365 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799047.1 Pfam PF01535 PPR Repeat 91 121 4.9e-27 93.0 PPR repeat
XP_057799047.1 Pfam PF23276 TPR_24 Repeat 109 218 7.7e-18 65.4 Pentatricopeptide repeat-containing protein
XP_057799047.1 Pfam PF13812 PPR_3 Repeat 150 204 5.2e-18 65.6 Pentatricopeptide repeat domain
XP_057799047.1 Pfam PF13041 PPR_2 Repeat 157 204 3.6e-43 146.2 PPR repeat family
XP_057799047.1 Pfam PF01535 PPR Repeat 196 221 4.9e-27 93.0 PPR repeat
XP_057799047.1 Pfam PF13812 PPR_3 Repeat 291 346 5.2e-18 65.6 Pentatricopeptide repeat domain
XP_057799047.1 Pfam PF12854 PPR_1 Repeat 296 327 5.3e-23 81.2 PPR repeat
XP_057799047.1 Pfam PF13041 PPR_2 Repeat 299 347 3.6e-43 146.2 PPR repeat family
XP_057799047.1 Pfam PF01535 PPR Repeat 303 328 4.9e-27 93.0 PPR repeat
XP_057799047.1 Pfam PF01535 PPR Repeat 338 365 4.9e-27 93.0 PPR repeat
XP_057799048.1 Pfam PF01535 PPR Repeat 91 121 4.9e-27 93.0 PPR repeat
XP_057799048.1 Pfam PF23276 TPR_24 Repeat 109 218 7.7e-18 65.4 Pentatricopeptide repeat-containing protein
XP_057799048.1 Pfam PF13812 PPR_3 Repeat 150 204 5.2e-18 65.6 Pentatricopeptide repeat domain
XP_057799048.1 Pfam PF13041 PPR_2 Repeat 157 204 3.6e-43 146.2 PPR repeat family
XP_057799048.1 Pfam PF01535 PPR Repeat 196 221 4.9e-27 93.0 PPR repeat
XP_057799048.1 Pfam PF13812 PPR_3 Repeat 291 346 5.2e-18 65.6 Pentatricopeptide repeat domain
XP_057799048.1 Pfam PF12854 PPR_1 Repeat 296 327 5.3e-23 81.2 PPR repeat
XP_057799048.1 Pfam PF13041 PPR_2 Repeat 299 347 3.6e-43 146.2 PPR repeat family
XP_057799048.1 Pfam PF01535 PPR Repeat 303 328 4.9e-27 93.0 PPR repeat
XP_057799048.1 Pfam PF01535 PPR Repeat 338 365 4.9e-27 93.0 PPR repeat
XP_057799049.1 Pfam PF01535 PPR Repeat 91 121 4.9e-27 93.0 PPR repeat
XP_057799049.1 Pfam PF23276 TPR_24 Repeat 109 218 7.7e-18 65.4 Pentatricopeptide repeat-containing protein
XP_057799049.1 Pfam PF13812 PPR_3 Repeat 150 204 5.2e-18 65.6 Pentatricopeptide repeat domain
XP_057799049.1 Pfam PF13041 PPR_2 Repeat 157 204 3.6e-43 146.2 PPR repeat family
XP_057799049.1 Pfam PF01535 PPR Repeat 196 221 4.9e-27 93.0 PPR repeat
XP_057799049.1 Pfam PF13812 PPR_3 Repeat 291 346 5.2e-18 65.6 Pentatricopeptide repeat domain
XP_057799049.1 Pfam PF12854 PPR_1 Repeat 296 327 5.3e-23 81.2 PPR repeat
XP_057799049.1 Pfam PF13041 PPR_2 Repeat 299 347 3.6e-43 146.2 PPR repeat family
XP_057799049.1 Pfam PF01535 PPR Repeat 303 328 4.9e-27 93.0 PPR repeat
XP_057799049.1 Pfam PF01535 PPR Repeat 338 365 4.9e-27 93.0 PPR repeat
XP_057799051.1 Pfam PF01535 PPR Repeat 91 121 4.9e-27 93.0 PPR repeat
XP_057799051.1 Pfam PF23276 TPR_24 Repeat 109 218 7.7e-18 65.4 Pentatricopeptide repeat-containing protein
XP_057799051.1 Pfam PF13812 PPR_3 Repeat 150 204 5.2e-18 65.6 Pentatricopeptide repeat domain
XP_057799051.1 Pfam PF13041 PPR_2 Repeat 157 204 3.6e-43 146.2 PPR repeat family
XP_057799051.1 Pfam PF01535 PPR Repeat 196 221 4.9e-27 93.0 PPR repeat
XP_057799051.1 Pfam PF13812 PPR_3 Repeat 291 346 5.2e-18 65.6 Pentatricopeptide repeat domain
XP_057799051.1 Pfam PF12854 PPR_1 Repeat 296 327 5.3e-23 81.2 PPR repeat
XP_057799051.1 Pfam PF13041 PPR_2 Repeat 299 347 3.6e-43 146.2 PPR repeat family
XP_057799051.1 Pfam PF01535 PPR Repeat 303 328 4.9e-27 93.0 PPR repeat
XP_057799051.1 Pfam PF01535 PPR Repeat 338 365 4.9e-27 93.0 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057943064.1
AAAATTTTCCCTTACTAATTTCATAAAATTATTTCACTCTCTCAATTCTCACTTCTCAAAAATTGAAAAAAGAAAAAAAAAAGGAAGAATCAACATTTTCTGACTACCACTCTAACGGCTGCGCCGCCACTCACCGCCGGCCGTCGCACCCACACTTCGCACGAAACCGATGATCTTGAGCGGCAAAGAAGAGTGAATTAACAATTAGGAAAAAAGAGACCTAAATGGCGGCAGAAATACCGAGCTCGCACACTTCGATT...
XM_057943065.1
AAAATTTTCCCTTACTAATTTCATAAAATTATTTCACTCTCTCAATTCTCACTTCTCAAAAATTGAAAAAAGAAAAAAAAAAGGAAGAATCAACATTTTCTGACTACCACTCTAACGGCTGCGCCGCCACTCACCGCCGGCCGTCGCACCCACACTTCGCACGAAACCGATGATCTTGAGCGGCAAAGAAGAGTGAATTAACAATTAGGAAAAAAGAGACCTAAATGGCGGCAGAAATACCGAGCTCGCACACTTCGATT...

CDS

4 records

下载 CDS FASTA
LOC131014910
ATGGCGGCAGAAATACCGAGCTCGCACACTTCGATTCCTCCAACCCGCTTCCCCACCCACCACGGCGCCGCCGACGTCCATCCCCAAGCCCGAATCCTCTGCGATATCGTCGCCACGGCGCCGGCGCACGAGGTCGAGGCTCGTCTCGCCTCCAGTCTAATCGAGCCCGAGCCCGAATTCATTCAACAAGTCCTCAAGCACTCGTACAACTCCCCTTCCGCCGCCGCCAAGTTTTTCCGGTGGTCCGGGCTGGAGCGCAG...
LOC131014910
ATGGCGGCAGAAATACCGAGCTCGCACACTTCGATTCCTCCAACCCGCTTCCCCACCCACCACGGCGCCGCCGACGTCCATCCCCAAGCCCGAATCCTCTGCGATATCGTCGCCACGGCGCCGGCGCACGAGGTCGAGGCTCGTCTCGCCTCCAGTCTAATCGAGCCCGAGCCCGAATTCATTCAACAAGTCCTCAAGCACTCGTACAACTCCCCTTCCGCCGCCGCCAAGTTTTTCCGGTGGTCCGGGCTGGAGCGCAG...

Protein

4 records

下载 Protein FASTA
XP_057799047.1
MAAEIPSSHTSIPPTRFPTHHGAADVHPQARILCDIVATAPAHEVEARLASSLIEPEPEFIQQVLKHSYNSPSAAAKFFRWSGLERSHTPYSWNLMVDMLGKNKLFDPMWDAIRSMKQEGLLSLTTFVSVFENYCIAGRIDDAVMTFGVLERYGIQPDTVAVNSLLSAICREDNRIGKALEFFERVKGKIPPDADSYAILLEGCEKEGNVAKAKVTFGEMVIRVGWSPEYMYAYDALLNTLVRGAQGDEAIKFLQVMKGK...
XP_057799048.1
MAAEIPSSHTSIPPTRFPTHHGAADVHPQARILCDIVATAPAHEVEARLASSLIEPEPEFIQQVLKHSYNSPSAAAKFFRWSGLERSHTPYSWNLMVDMLGKNKLFDPMWDAIRSMKQEGLLSLTTFVSVFENYCIAGRIDDAVMTFGVLERYGIQPDTVAVNSLLSAICREDNRIGKALEFFERVKGKIPPDADSYAILLEGCEKEGNVAKAKVTFGEMVIRVGWSPEYMYAYDALLNTLVRGAQGDEAIKFLQVMKGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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