Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004026`

染色体: Chr03 坐标: 59244408-59253458 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004026`
名称	SmilChr03G004026
描述	chorismate synthase 2, chloroplastic-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59244408 - 59253458 / `+`

ID 对照

NCBI Gene ID	`LOC131014915`
GeneID	`131014915`
locus_tag	`-`
NCBI Name	`LOC131014915`
原始查询	`LOC131014915`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chorismate synthase 2, chloroplastic-like
产物	chorismate synthase 2%2C chloroplastic-like
Arabidopsis	`AT1G48850` (EMB1144) chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase [Source:NCBI gene (formerly Entrezgene);Acc:841307] identity=72.1; qcov=0.504; evalue=2.6e-83; confidence=medium
Rice	`Os03g0254800` (CS) - identity=66.7; qcov=0.473; evalue=6.07e-75; confidence=medium
GO	GO:0004107 (chorismate synthase activity); GO:0005829 (cytosol); GO:0009073 (aromatic amino acid biosynthetic process); GO:0009423 (chorismate biosynthetic process); GO:0010181 (FMN binding)
KEGG	smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01264 (Chorismate_synt)
InterPro	-
eggNOG	-
NR	GeneID:131014915

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057799059.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057799059.1`
3	Mitochondrion	线粒体	0.60000	`XP_057799061.1`
4	Nucleus	细胞核	0.00000	`XP_057799061.1`
5	Chromosome	染色体	0.00000	`XP_057799061.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59244506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr3:59244553`	`T`	`TCC`	2bp_insertion	frameshift_variant	1	C26
`Chr3:59244553`	`T`	`TCC`	2bp_insertion	CDS_variant	1	C26
`Chr3:59248980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr3:59249021`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,B65
`Chr3:59249042`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:59249062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B60,C23,C42
`Chr3:59249241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:59249622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:59249714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:59249756`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B60,B75,C23,C42
`Chr3:59249780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B18,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799059.1

431 aa

216

431

Chorismate_synt

PF01264 Chorismate_synt 55-401 aa

XP_057799060.1

426 aa

213

426

Chorismate_synt

PF01264 Chorismate_synt 55-396 aa

XP_057799061.1

360 aa

180

360

Chorismate_synt

PF01264 Chorismate_synt 55-192 aa PF01264 Chorismate_synt 196-330 aa

XP_057799062.1

355 aa

178

355

Chorismate_synt

PF01264 Chorismate_synt 55-187 aa PF01264 Chorismate_synt 191-325 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799059.1`	Pfam	`PF01264`	Chorismate_synt	Family	55	401	1.3e-130	435.7	Chorismate synthase
`XP_057799060.1`	Pfam	`PF01264`	Chorismate_synt	Family	55	396	6.6e-127	423.5	Chorismate synthase
`XP_057799061.1`	Pfam	`PF01264`	Chorismate_synt	Family	55	192	1.8e-107	359.6	Chorismate synthase
`XP_057799061.1`	Pfam	`PF01264`	Chorismate_synt	Family	196	330	1.8e-107	359.6	Chorismate synthase
`XP_057799062.1`	Pfam	`PF01264`	Chorismate_synt	Family	55	187	9.7e-104	347.3	Chorismate synthase
`XP_057799062.1`	Pfam	`PF01264`	Chorismate_synt	Family	191	325	9.7e-104	347.3	Chorismate synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057943076.1
ATATCCACAATTCCACATACTGATACAACCTCTCCCTTCAAAAAATCAGCTACTTGACTCATCGGAAATGGCGTCTTCTCTCTCTACCAATACTAAACGCCTTCTCCGACCTCCATCTTCTTCCCTAGGATCCCTCCGCCCGCCGTTCATGCTGCATTCTCTCAGCCTTCGCCCATTCCCATCCAAACGTCTCCTAATTGAGGCCTCTGGTAGCACATTTGGGAGTTACTTCCGTGTGACGACGTTTGGAGAATCTAGAG...

XM_057943078.1
CCACAATTCCACATACTGATACAACCTCTCCCTTCAAAAAATCAGCTACTTGACTCATCGGAAATGGCGTCTTCTCTCTCTACCAATACTAAACGCCTTCTCCGACCTCCATCTTCTTCCCTAGGATCCCTCCGCCCGCCGTTCATGCTGCATTCTCTCAGCCTTCGCCCATTCCCATCCAAACGTCTCCTAATTGAGGCCTCTGGTAGCACATTTGGGAGTTACTTCCGTGTGACGACGTTTGGAGAATCTAGAGGCGG...

CDS

4 records

下载 CDS FASTA

LOC131014915
ATGGCGTCTTCTCTCTCTACCAATACTAAACGCCTTCTCCGACCTCCATCTTCTTCCCTAGGATCCCTCCGCCCGCCGTTCATGCTGCATTCTCTCAGCCTTCGCCCATTCCCATCCAAACGTCTCCTAATTGAGGCCTCTGGTAGCACATTTGGGAGTTACTTCCGTGTGACGACGTTTGGAGAATCTAGAGGCGGCGGCGTCGGCTGCGTCATCGACGGATGCCCGCCTAGGCTTCCCCTTTCTCAAGCTGATTTGCA...

Protein

4 records

下载 Protein FASTA

XP_057799059.1
MASSLSTNTKRLLRPPSSSLGSLRPPFMLHSLSLRPFPSKRLLIEASGSTFGSYFRVTTFGESRGGGVGCVIDGCPPRLPLSQADLQLELDRRRPGQNKITSPRKESDTCKIASGVADGVTTGSPIKVEVPNTNQTNDLSEMSVVYRPSHADATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILNHYAGTQILAYVSQVHKVVLPEDLVDHERVTLDQIESNIVRCPDPEYAKKMIGAIDTVTARGDSAGGVVTC...

XP_057799060.1
MASSLSTNTKRLLRPPSSSLGSLRPPFMLHSLSLRPFPSKRLLIEASGSTFGSYFRVTTFGESRGGGVGCVIDGCPPRLPLSQADLQLELDRRRPGQNKITSPRKESDTCKIASGVADGVTTGSPIKVEVPNTNQTNDLSEMSVVYRPSHADATYDFKYGGGGRSSARETIGRVAAGAVAKKILNHYAGTQILAYVSQVHKVVLPEDLVDHERVTLDQIESNIVRCPDPEYAKKMIGAIDTVTARGDSAGGVVTCIVRNV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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