Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004094`

染色体: Chr03 坐标: 59818187-59821109 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004094`
名称	SmilChr03G004094
描述	F-box/FBD/LRR-repeat protein At1g13570-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59818187 - 59821109 / `-`

ID 对照

NCBI Gene ID	`LOC131014917`
GeneID	`131014917`
locus_tag	`-`
NCBI Name	`LOC131014917`
原始查询	`LOC131014917`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/FBD/LRR-repeat protein At1g13570-like
产物	F-box/FBD/LRR-repeat protein At1g13570-like
Arabidopsis	`AT1G13570` (AT1G13570) F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837918] identity=34.1; qcov=0.976; evalue=5.47e-64; confidence=low
Rice	`Os08g0462300` (OsFbox455) - identity=27; qcov=0.993; evalue=4.25e-27; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF08387 (FBD); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:131014917

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799065.1`
2	Cytoplasm	细胞质	0.60000	`XP_057799065.1`
3	Cytosol	细胞质基质	0.20000	`XP_057799065.1`
4	Chromosome	染色体	0.00000	`XP_057799065.1`
5	Centromere	着丝粒	0.00000	`XP_057799065.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59818487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,B109
`Chr3:59818544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:59818622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:59818954`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C77
`Chr3:59818966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B117,B140,B36,B46
`Chr3:59819082`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,D9
`Chr3:59819098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr3:59819283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr3:59819653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr3:59819745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B38,B39,C77
`Chr3:59819854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799065.1

429 aa

214

429

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

FBD

PF00646 F-box 20-58 aa PF23622 LRR_At1g61320_AtMIF1 83-387 aa PF24758 LRR_At5g56370 107-327 aa PF08387 FBD 351-387 aa

XP_057799066.1

421 aa

210

421

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

FBD

PF00646 F-box 12-50 aa PF23622 LRR_At1g61320_AtMIF1 75-379 aa PF24758 LRR_At5g56370 99-319 aa PF08387 FBD 343-379 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799065.1`	Pfam	`PF00646`	F-box	Domain	20	58	7.4e-08	32.7	F-box domain
`XP_057799065.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	83	387	2.8e-16	60.6	At1g61320/AtMIF1, LRR domain
`XP_057799065.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	107	327	8.9e-19	68.8	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057799065.1`	Pfam	`PF08387`	FBD	Repeat	351	387	9.4e-09	35.7	FBD
`XP_057799066.1`	Pfam	`PF00646`	F-box	Domain	12	50	7.2e-08	32.8	F-box domain
`XP_057799066.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	75	379	2.7e-16	60.7	At1g61320/AtMIF1, LRR domain
`XP_057799066.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	99	319	8.3e-19	68.9	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057799066.1`	Pfam	`PF08387`	FBD	Repeat	343	379	9.2e-09	35.8	FBD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943083.1
TTGTATAATTAACAGTGGGTGGGGTTTGCATTTGGTTATCTCCAATTTCTTCTACGTATTTCCGCACCTCAAAAATCGGTAATTTACTCTCTCATACGAACTTCCATCTTTGTTTTTCTCGCCCATTTTACCCAATTCAGCTGCTCCTGCTCAATCCAATCCGGCGCAGAAATTGATCCGATAGTTTTTATCAGGATGAAGAGTTGTCTAAGAACTGATGCTGATTTGCTGACCAATCTGCCCAATAACATAATTGAGAA...

XM_057943082.1
GTTAGTTGAATGATGTATTAGTCTTACTTACTGTAAGATTTTTTTTTTTTTATCTTATGTGTCTTGTCAATCTGAAAGGTTAAAGCAACGTTTTGCCCTTTGAGATTAAGTAATGGTTAGTTGAACCTACCTTTTTCTTGGTTAACATACAGTAAGCATTCATGTGGTCAGTTTTGTGTTTACTTCTGCAGCAAATGATTGTCTCTCTCTATAGCTTAAGGGATTTTTTGCTGAATGTCATGTAGTTTTTTTATCAGGAT...

CDS

2 records

下载 CDS FASTA

LOC131014917
ATGTCATGTAGTTTTTTTATCAGGATGAAGAGTTGTCTAAGAACTGATGCTGATTTGCTGACCAATCTGCCCAATAACATAATTGAGAACATTCTTGGATGTTTGCCTCTTCGAGATGTGGTGAGGACTAGCATTTTGTCGAGAGAATGGAGGTACAAATGGGCCTCATGCCCGGATATCGTGTTTGATTTCTGGTTCGATCAAATGTTTCTGGGAGGCCACAAACTGGAGTCCCTGATTTACCAAATATTGAAACTCCA...

LOC131014917
ATGAAGAGTTGTCTAAGAACTGATGCTGATTTGCTGACCAATCTGCCCAATAACATAATTGAGAACATTCTTGGATGTTTGCCTCTTCGAGATGTGGTGAGGACTAGCATTTTGTCGAGAGAATGGAGGTACAAATGGGCCTCATGCCCGGATATCGTGTTTGATTTCTGGTTCGATCAAATGTTTCTGGGAGGCCACAAACTGGAGTCCCTGATTTACCAAATATTGAAACTCCACAAGGGCCCCTTGCTAAAATTTGG...

Protein

2 records

下载 Protein FASTA

XP_057799065.1
MSCSFFIRMKSCLRTDADLLTNLPNNIIENILGCLPLRDVVRTSILSREWRYKWASCPDIVFDFWFDQMFLGGHKLESLIYQILKLHKGPLLKFGLQVPDLKSNPDIDQWVRLLPNNTLQELTLHVSRGEAHRLSSHLLTFQHLKNLRLYNCVFDPVPGFKGFSKLVNLELQSVVLVPESFTTFIASCPAVERLRLIHCTSFDCLELTGPKLKYFEFNGVFKSVSFKNCPALKDIKLTFSSMEFKRGNSFSLDLVRSLSC...

XP_057799066.1
MKSCLRTDADLLTNLPNNIIENILGCLPLRDVVRTSILSREWRYKWASCPDIVFDFWFDQMFLGGHKLESLIYQILKLHKGPLLKFGLQVPDLKSNPDIDQWVRLLPNNTLQELTLHVSRGEAHRLSSHLLTFQHLKNLRLYNCVFDPVPGFKGFSKLVNLELQSVVLVPESFTTFIASCPAVERLRLIHCTSFDCLELTGPKLKYFEFNGVFKSVSFKNCPALKDIKLTFSSMEFKRGNSFSLDLVRSLSCLPALEDLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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