Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004090`

染色体: Chr03 坐标: 59789143-59793198 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004090`
名称	SmilChr03G004090
描述	carbon catabolite repressor protein 4 homolog 4-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59789143 - 59793198 / `+`

ID 对照

NCBI Gene ID	`LOC131014924`
GeneID	`131014924`
locus_tag	`-`
NCBI Name	`LOC131014924`
原始查询	`LOC131014924`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	carbon catabolite repressor protein 4 homolog 4-like
产物	carbon catabolite repressor protein 4 homolog 4-like
Arabidopsis	`AT1G31500` (AT1G31500) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840040] identity=61.1; qcov=1.01; evalue=3.7e-158; confidence=high
Rice	`Os05g0389500` - identity=57.5; qcov=1.01; evalue=3.54e-151; confidence=high
GO	GO:0004535 (poly(A)-specific ribonuclease activity)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF03372 (Exo_endo_phos)
InterPro	-
eggNOG	-
NR	GeneID:131014924

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057799086.1`
2	Cytoplasm	细胞质	0.80000	`XP_057799086.1`
3	Mitochondrion	线粒体	0.60000	`XP_057799085.1`
4	Mitochondrion matrix	线粒体基质	0.60000	`XP_057799085.1`
5	Nucleus	细胞核	0.20000	`XP_057799086.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59789342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A8,B125,D2
`Chr3:59789930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B37,C47,C82
`Chr3:59791084`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr3:59791391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr3:59791786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr3:59792087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr3:59792153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B33,C39,C56
`Chr3:59792817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:59792860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B125,D2
`Chr3:59792960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799085.1

381 aa

190

381

Exo_endo_phos

PF03372 Exo_endo_phos 52-370 aa

XP_057799086.1

363 aa

182

363

Exo_endo_phos

PF03372 Exo_endo_phos 34-352 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799085.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	52	370	9.6e-22	78.5	Endonuclease/Exonuclease/phosphatase family
`XP_057799086.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	34	352	8e-22	78.8	Endonuclease/Exonuclease/phosphatase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943102.1
GTAGAAAATTGCAGCGGCCCAATATTATAAACGAAAATTCAAGATAGCCCAATTTAACTCAGGCCCAGTCGAAAGGTCCAACCCAATGATGAAGACACGTGAATATCACGTGCCTAATCTAAGCTGAAGAATCTCAGCTCAGCCGTCGTCGTCGTCGTCAAAATTGGACTCTGCGTTTCTGCTGCTTCCCAAGGCAATGCTGAGGTGCTCTTTCTTGCCTCCTCGACTCAGCGTAGCTCGTTACAGCAAGATGAGCACAC...

XM_057943103.1
GTGAATATCACGTGCCTAATCTAAGCTGAAGAATCTCAGCTCAGCCGTCGTCGTCGTCGTCAAAATTGGACTCTGCGTTTCTGCTGCTTCCCAAGGCAATGCTGAGGTGCTCTTTCTTGCCTCCTCGACTCAGCTCGTTACAGCAAGATGAGCACACCTCCTGGACCAATATGTCGAAAGTTTGTTCCAGTTGAGCAGAGTGAAGTTACTTCAATCAGTAAAAGTGATGGCTTCAAATTCCGGCTTGTATCTTATAATAT...

CDS

2 records

下载 CDS FASTA

LOC131014924
ATGCTGAGGTGCTCTTTCTTGCCTCCTCGACTCAGCGTAGCTCGTTACAGCAAGATGAGCACACCTCCTGGACCAATATGTCGAAAGTTTGTTCCAGTTGAGCAGAGTGAAGTTACTTCAATCAGTAAAAGTGATGGCTTCAAATTCCGGCTTGTATCTTATAATATCTTGGCACAGGCATACGTGAAAAGCATTATCTTTCCACACTCACCAGCTCCTAGTCTCAAGTGGAAAGCTCGTTCGCAGGCCATTCTCACAGT...

LOC131014924
ATGAGCACACCTCCTGGACCAATATGTCGAAAGTTTGTTCCAGTTGAGCAGAGTGAAGTTACTTCAATCAGTAAAAGTGATGGCTTCAAATTCCGGCTTGTATCTTATAATATCTTGGCACAGGCATACGTGAAAAGCATTATCTTTCCACACTCACCAGCTCCTAGTCTCAAGTGGAAAGCTCGTTCGCAGGCCATTCTCACAGTTCTTAAGAGCCTCGAAGCAGATTTTCTTTGTCTACAGGAAGTAGATGAGTATGA...

Protein

2 records

下载 Protein FASTA

XP_057799085.1
MLRCSFLPPRLSVARYSKMSTPPGPICRKFVPVEQSEVTSISKSDGFKFRLVSYNILAQAYVKSIIFPHSPAPSLKWKARSQAILTVLKSLEADFLCLQEVDEYDTFYKNNMASLGYSSIYIQRSGKKRDGCGIFYKQDNAELVIEEKIDYNDLVATVEDEKTSSLDDGNKLLVGGNKEEPKTGAEKESPSDRGDPNDPRVRLKRDCVGTMAAFRLKNPTFHHVIIANTHIYWDPEWADVKIAQAKYLLSRLAEFKMLVA...

XP_057799086.1
MSTPPGPICRKFVPVEQSEVTSISKSDGFKFRLVSYNILAQAYVKSIIFPHSPAPSLKWKARSQAILTVLKSLEADFLCLQEVDEYDTFYKNNMASLGYSSIYIQRSGKKRDGCGIFYKQDNAELVIEEKIDYNDLVATVEDEKTSSLDDGNKLLVGGNKEEPKTGAEKESPSDRGDPNDPRVRLKRDCVGTMAAFRLKNPTFHHVIIANTHIYWDPEWADVKIAQAKYLLSRLAEFKMLVARKFDCSPSIIVAGDFNSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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