Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004087`

染色体: Chr03 坐标: 59771863-59775784 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004087`
名称	SmilChr03G004087
描述	protein trichome birefringence-like 34
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	59771863 - 59775784 / `-`

ID 对照

NCBI Gene ID	`LOC131014945`
GeneID	`131014945`
locus_tag	`-`
NCBI Name	`LOC131014945`
原始查询	`LOC131014945`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein trichome birefringence-like 34
产物	protein trichome birefringence-like 34
Arabidopsis	`AT2G38320` (TBL34) TRICHOME BIREFRINGENCE-LIKE 34 [Source:NCBI gene (formerly Entrezgene);Acc:818412] identity=43.5; qcov=0.868; evalue=7.4e-34; confidence=medium
Rice	`Os03g0817500` (OsTBL3) - identity=60; qcov=0.53; evalue=4.59e-33; confidence=medium
GO	GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:131014945

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057799112.1`
2	Vacuole	液泡	0.40000	`XP_057799111.1`
3	Cytoplasm	细胞质	0.20000	`XP_057799111.1`
4	Secreted	分泌到胞外	0.20000	`XP_057799111.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057799111.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:59771938`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B47
`Chr3:59771994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B110,C25,C5,C76
`Chr3:59772037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,C23,C85
`Chr3:59772185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B132,B36,C26,C43
`Chr3:59772227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B61,B8,B82,B94
`Chr3:59774089`	`A`	`AT`	1bp_insertion	frameshift_variant	157	A1,A13,A15,A16,A19,A2,A21,A22,A25,A3,A4,A7,A8,B1,B10,B100,B101,B103,B106,B11,B110,B112,B113,B114,B12,B121,B122,B124,B125,B127,B129,B13,B130,B137,B138,B139,B14,B140,B15,B16,B17,B19,B2,B24,B25,B26,B27,B29,B3,B30,B31,B33,B36,B37,B38,B39,B4,B40,B42,B43,B46,B48,B49,B50,B52,B53,B54,B55,B56,B57,B58,B59,B6,B61,B64,B66,B67,B69,B70,B74,B75,B77,B78,B79,B80,B81,B85,B86,B89,B9,B90,B91,B92,B95,B96,B98,B99,C1,C11,C13,C14,C16,C18,C20,C21,C24,C25,C27,C28,C32,C34,C35,C36,C37,C39,C40,C41,C42,C43,C44,C45,C48,C5,C52,C53,C54,C56,C59,C6,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C72,C73,C74,C76,C77,C78,C79,C82,C83,C86,C87,D1,D2,D3,D4,D5,D7,D9
`Chr3:59774092`	`TC`	`T`	1bp_deletion	frameshift_variant	155	A1,A13,A15,A16,A19,A2,A21,A22,A25,A3,A4,A7,A8,B1,B10,B100,B101,B103,B106,B11,B110,B112,B113,B12,B121,B122,B124,B125,B127,B129,B13,B130,B137,B138,B139,B14,B140,B15,B16,B17,B19,B2,B24,B25,B26,B27,B29,B3,B30,B31,B33,B36,B37,B38,B39,B4,B40,B42,B43,B46,B48,B49,B52,B53,B54,B55,B56,B57,B58,B59,B6,B61,B64,B66,B67,B69,B70,B74,B75,B77,B78,B79,B80,B81,B85,B86,B89,B9,B90,B91,B92,B95,B96,B98,B99,C1,C11,C13,C14,C16,C18,C20,C21,C24,C25,C27,C28,C32,C34,C35,C36,C37,C39,C40,C41,C42,C43,C44,C45,C48,C5,C52,C53,C54,C56,C59,C6,C60,C61,C63,C64,C65,C66,C67,C68,C69,C7,C72,C73,C74,C76,C77,C78,C79,C82,C83,C86,C87,D1,D2,D3,D4,D5,D7,D9
`Chr3:59775583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B133,B95,C64,C66
`Chr3:59775622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799111.1

178 aa

178

PC-Esterase

PF13839 PC-Esterase 2-173 aa

XP_057799112.1

151 aa

151

PMR5N

PC-Esterase

PF14416 PMR5N 61-114 aa PF13839 PC-Esterase 115-144 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799111.1`	Pfam	`PF13839`	PC-Esterase	Family	2	173	4.8e-42	145.6	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057799112.1`	Pfam	`PF14416`	PMR5N	Domain	61	114	6.7e-22	78.3	PMR5 N terminal Domain
`XP_057799112.1`	Pfam	`PF13839`	PC-Esterase	Family	115	144	4.4e-09	37.4	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943128.1
GAAAAACAGATTAATTATGAGTTGTGAAAGAGAGAAAATGAGATGGATGAAGTCGGCTTTTCTAGGAAGCATCTTCGTCGCAACTCTGCTCACCATTGCTCTTCATCAAACGAACAATCTTCATCTCGTAGATACATTTGGATTCCTTCTAGAAGATCAACACCACCCTCAGAAACAAAATGATGATGATAATGATGGGTGCGATTTGTTTTCAGGCAGATGGGTTTTCGACGACGTGAACTACCCTTTGTACGAGGAGG...

XM_057943129.1
GAAAAACAGATTAATTATGAGTTGTGAAAGAGAGAAAATGAGATGGATGAAGTCGGCTTTTCTAGGAAGCATCTTCGTCGCAACTCTGCTCACCATTGCTCTTCATCAAACGAACAATCTTCATCTCGTAGATACATTTGGATTCCTTCTAGAAGATCAACACCACCCTCAGAAACAAAATGATGATGATAATGATGGGTGCGATTTGTTTTCAGGCAGATGGGTTTTCGACGACGTGAACTACCCTTTGTACGAGGAGG...

CDS

2 records

下载 CDS FASTA

LOC131014945
ATGTGGTGGATTAAGTACAACATCACTCTCCGATGGGGATCATTTGGGAGTAGTGACGCCATTAGCAAAGTAGTATTAAAGGACGCTCGTCATTACGAAATAAGCATGCGCACGTGGTCGGATTGGCTCGAGCTCAACGTCAATCGCACCAAAACAAAGCTCTTCTTCATGAGCCTTTCGCCCTTTCACACAAACGGCGAACATTTTGACGGGCATTCATGCTACAACGAGACGAAGCCGGTTTCGAAGAAGGATTACTG...

LOC131014945
ATGAGTTGTGAAAGAGAGAAAATGAGATGGATGAAGTCGGCTTTTCTAGGAAGCATCTTCGTCGCAACTCTGCTCACCATTGCTCTTCATCAAACGAACAATCTTCATCTCGTAGATACATTTGGATTCCTTCTAGAAGATCAACACCACCCTCAGAAACAAAATGATGATGATAATGATGGGTGCGATTTGTTTTCAGGCAGATGGGTTTTCGACGACGTGAACTACCCTTTGTACGAGGAGGGGAAGTGCTCTTTCAT...

Protein

2 records

下载 Protein FASTA

XP_057799111.1
MWWIKYNITLRWGSFGSSDAISKVVLKDARHYEISMRTWSDWLELNVNRTKTKLFFMSLSPFHTNGEHFDGHSCYNETKPVSKKDYWSIQTDREMMGIAESTIERLKGRGLHVQYLNITHLSDYRRDAHVSMSRNLSYLKNRESLINNPQQYADCVHWCLPGVPDVWNIILYHYIINT

XP_057799112.1
MSCEREKMRWMKSAFLGSIFVATLLTIALHQTNNLHLVDTFGFLLEDQHHPQKQNDDDNDGCDLFSGRWVFDDVNYPLYEEGKCSFMKNEFACQKHGRKNVEYQQWAWKPHNCQLPRFDGRKLMEKIRGKRVVFVGDSLNRKSMDVNALPY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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