Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004102

染色体: Chr03 坐标: 59908999-59912318 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004102
名称SmilChr03G004102
描述protein MOS2-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向59908999 - 59912318 / -

ID 对照

NCBI Gene IDLOC131014966
GeneID131014966
locus_tag-
NCBI NameLOC131014966
原始查询LOC131014966

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein MOS2-like
产物protein MOS2-like
ArabidopsisAT1G33520 (MOS2)
D111/G-patch domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:840246]
identity=45.6; qcov=1.05; evalue=1.29e-115; confidence=high
RiceOs03g0253500
-
identity=33.1; qcov=1.05; evalue=2.85e-67; confidence=low
GOGO:0000398 (mRNA splicing, via spliceosome); GO:0003676 (nucleic acid binding); GO:0005681 (spliceosomal complex)
KEGGsmil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
PfamPF01585 (G-patch); PF12656 (G-patch_2); PF25088 (GPKOW_C)
InterPro-
eggNOG-
NRGeneID:131014966

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057799125.1
2 Chromosome 染色体 0.00000 XP_057799125.1
3 Centromere 着丝粒 0.00000 XP_057799125.1
4 Chromatin 染色质 0.00000 XP_057799125.1
5 Telomere 端粒 0.00000 XP_057799125.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057799125.1
459 aa
N
1
230
459
G-patch_2
G-patch
GPKOW_C
C
PF12656 G-patch_2 142-198 aa PF01585 G-patch 156-197 aa PF25088 GPKOW_C 345-452 aa
XP_057799126.1
459 aa
N
1
230
459
G-patch_2
G-patch
GPKOW_C
C
PF12656 G-patch_2 142-198 aa PF01585 G-patch 156-197 aa PF25088 GPKOW_C 345-452 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799125.1 Pfam PF12656 G-patch_2 Domain 142 198 4.9e-19 68.8 G-patch domain
XP_057799125.1 Pfam PF01585 G-patch Family 156 197 1e-06 29.2 G-patch domain
XP_057799125.1 Pfam PF25088 GPKOW_C Domain 345 452 4.4e-40 136.8 GPKOW C-terminal domain
XP_057799126.1 Pfam PF12656 G-patch_2 Domain 142 198 4.9e-19 68.8 G-patch domain
XP_057799126.1 Pfam PF01585 G-patch Family 156 197 1e-06 29.2 G-patch domain
XP_057799126.1 Pfam PF25088 GPKOW_C Domain 345 452 4.4e-40 136.8 GPKOW C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

15 records

下载 cDNA FASTA
XR_009098404.1
AACGACAACTTTGACTGTGTTGATTATTAGGTTCGGAATAGCAATTTCCCCCTTTTCCTGATAACCCTAATTAGGATTTGTGTCTTCATCAATCATCAGATTGATTCAAGGGTTTTTCTTCAAAATCTTGTTGCGCGACTGCTACGATGAGCTTCTCCTTCTCCATCAACGCGAAAGGGAAACCCCAATCCAATCGACTGAAAAAGCCATCCGATGCCGCGGCCGATTCTCCATCCATCAACTACGTCAGCGAATTCCGC...
XR_009098405.1
AACGACAACTTTGACTGTGTTGATTATTAGGTTCGGAATAGCAATTTCCCCCTTTTCCTGATAACCCTAATTAGGATTTGTGTCTTCATCAATCATCAGATTGATTCAAGGGTTTTTCTTCAAAATCTTGTTGCGCGACTGCTACGATGAGCTTCTCCTTCTCCATCAACGCGAAAGGGAAACCCCAATCCAATCGACTGAAAAAGCCATCCGATGCCGCGGCCGATTCTCCATCCATCAACTACGTCAGCGAATTCCGC...

CDS

2 records

下载 CDS FASTA
LOC131014966
ATGAGCTTCTCCTTCTCCATCAACGCGAAAGGGAAACCCCAATCCAATCGACTGAAAAAGCCATCCGATGCCGCGGCCGATTCTCCATCCATCAACTACGTCAGCGAATTCCGCTCCGACGAAGCTCCGGCGGCGGCGGATTCCAAGATCAAGCCGATTACTCCAATCCCAAACGCGTGGCGCCCCAATAAAAAACTCAAGAACCTCCCCAATCTCCCGCCGATTTCCCAATCGAACGGTGAGGATGCGGCTGTTCAATT...
LOC131014966
ATGAGCTTCTCCTTCTCCATCAACGCGAAAGGGAAACCCCAATCCAATCGACTGAAAAAGCCATCCGATGCCGCGGCCGATTCTCCATCCATCAACTACGTCAGCGAATTCCGCTCCGACGAAGCTCCGGCGGCGGCGGATTCCAAGATCAAGCCGATTACTCCAATCCCAAACGCGTGGCGCCCCAATAAAAAACTCAAGAACCTCCCCAATCTCCCGCCGATTTCCCAATCGAACGGTGAGGATGCGGCTGTTCAATT...

Protein

2 records

下载 Protein FASTA
XP_057799125.1
MSFSFSINAKGKPQSNRLKKPSDAAADSPSINYVSEFRSDEAPAAADSKIKPITPIPNAWRPNKKLKNLPNLPPISQSNGEDAAVQFELDPGSNPEPTDTSTGYGLNLRQPSGAAIDAPNGNYETISDMELRRLREDLGNLPDGPGLDEFEDVPVDGFGAALLSGYGWKEGRGIGRNAKEDVKIAEVTRKRDRGGLGFIDENPEPEKQINTNGNAGANHVNGNGRPEKMKGLKEKDTKGFVKDKEVVIVNGREMGMKGKI...
XP_057799126.1
MSFSFSINAKGKPQSNRLKKPSDAAADSPSINYVSEFRSDEAPAAADSKIKPITPIPNAWRPNKKLKNLPNLPPISQSNGEDAAVQFELDPGSNPEPTDTSTGYGLNLRQPSGAAIDAPNGNYETISDMELRRLREDLGNLPDGPGLDEFEDVPVDGFGAALLSGYGWKEGRGIGRNAKEDVKIAEVTRKRDRGGLGFIDENPEPEKQINTNGNAGANHVNGNGRPEKMKGLKEKDTKGFVKDKEVVIVNGREMGMKGKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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