当前解析结果
SmilChr01G002279| 统一新 Gene ID | SmilChr01G002279 |
|---|---|
| 名称 | SmilChr01G002279 |
| 描述 | ABC transporter B family member 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 39582503 - 39591376 / + |
| NCBI Gene ID | LOC131014975 |
|---|---|
| GeneID | 131014975 |
| locus_tag | - |
| NCBI Name | LOC131014975 |
| 原始查询 | LOC131014975 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 2-like |
| 产物 | ABC transporter B family member 2-like |
| Arabidopsis | AT4G25960 (ABCB2)P-glycoprotein 2 [Source:NCBI gene (formerly Entrezgene);Acc:828702] identity=76.2; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0693700 (OsABCB11)- identity=74.5; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014975 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799135.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057799135.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057799135.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799135.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799135.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:39582858 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | C11,C63,C69 |
Chr1:39582858 |
AT |
A |
1bp_deletion | CDS_variant | 3 | C11,C63,C69 |
Chr1:39582958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,A4,D10 |
Chr1:39582970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C57 |
Chr1:39582999 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B32,C63,C69 |
Chr1:39583692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr1:39583792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,A8 |
Chr1:39587252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B67,B79,C29,C42 |
Chr1:39587289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr1:39587293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C57 |
Chr1:39587679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr1:39587945 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | A19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799135.1PF00664
ABC_membrane 48-319 aa
PF00005
ABC_tran 390-538 aa
PF00664
ABC_membrane 694-963 aa
PF00005
ABC_tran 1030-1178 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799135.1 |
Pfam | PF00664 |
ABC_membrane | Family | 48 | 319 | 2.7e-88 | 296.9 | ABC transporter transmembrane region |
XP_057799135.1 |
Pfam | PF00005 |
ABC_tran | Domain | 390 | 538 | 1.6e-70 | 236.7 | ABC transporter |
XP_057799135.1 |
Pfam | PF00664 |
ABC_membrane | Family | 694 | 963 | 2.7e-88 | 296.9 | ABC transporter transmembrane region |
XP_057799135.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1030 | 1178 | 1.6e-70 | 236.7 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。