Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002280`

染色体: Chr01 坐标: 39592366-39595300 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002280`
名称	SmilChr01G002280
描述	inositol-tetrakisphosphate 1-kinase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	39592366 - 39595300 / `-`

ID 对照

NCBI Gene ID	`LOC131014980`
GeneID	`131014980`
locus_tag	`-`
NCBI Name	`LOC131014980`
原始查询	`LOC131014980`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	inositol-tetrakisphosphate 1-kinase 1-like
产物	inositol-tetrakisphosphate 1-kinase 1-like
Arabidopsis	`AT5G16760` (ITPK1) Inositol 1,3,4-trisphosphate 5/6-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831539] identity=56.1; qcov=0.864; evalue=1.85e-124; confidence=high
Rice	`Os10g0576100` (OsITPK5) - identity=62.1; qcov=0.859; evalue=1.27e-135; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0032957 (inositol trisphosphate metabolic process); GO:0047325 (inositol-3,4,5,6-tetrakisphosphate 1-kinase activity); GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity); GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage))
Pfam	PF05770 (Ins134_P3_kin); PF17927 (Ins134_P3_kin_N)
InterPro	-
eggNOG	-
NR	GeneID:131014980

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057799144.1`
2	Cytosol	细胞质基质	0.80000	`XP_057799144.1`
3	Nucleus	细胞核	0.40000	`XP_057799144.1`
4	Chromosome	染色体	0.00000	`XP_057799144.1`
5	Centromere	着丝粒	0.00000	`XP_057799144.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:39593923`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B8
`Chr1:39594201`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,A4,C35,C65
`Chr1:39594280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B90,B92,C37
`Chr1:39594385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B131,B56,B96,C23
`Chr1:39594496`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B90,B92,C37
`Chr1:39594766`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B84
`Chr1:39594766`	`GT`	`G`	1bp_deletion	CDS_variant	1	B84
`Chr1:39594895`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A21,A4,C35,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799144.1

369 aa

184

369

Ins134_P3_kin_N

Ins134_P3_kin

PF17927 Ins134_P3_kin_N 11-89 aa PF05770 Ins134_P3_kin 114-315 aa

XP_057799153.1

369 aa

184

369

Ins134_P3_kin_N

Ins134_P3_kin

PF17927 Ins134_P3_kin_N 11-89 aa PF05770 Ins134_P3_kin 114-315 aa

XP_057799159.1

369 aa

184

369

Ins134_P3_kin_N

Ins134_P3_kin

PF17927 Ins134_P3_kin_N 11-89 aa PF05770 Ins134_P3_kin 114-315 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799144.1`	Pfam	`PF17927`	Ins134_P3_kin_N	Domain	11	89	2e-30	105.8	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
`XP_057799144.1`	Pfam	`PF05770`	Ins134_P3_kin	Domain	114	315	1.7e-82	276.5	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
`XP_057799153.1`	Pfam	`PF17927`	Ins134_P3_kin_N	Domain	11	89	2e-30	105.8	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
`XP_057799153.1`	Pfam	`PF05770`	Ins134_P3_kin	Domain	114	315	1.7e-82	276.5	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
`XP_057799159.1`	Pfam	`PF17927`	Ins134_P3_kin_N	Domain	11	89	2e-30	105.8	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
`XP_057799159.1`	Pfam	`PF05770`	Ins134_P3_kin	Domain	114	315	1.7e-82	276.5	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943170.1
AAAACAGGTCCTCAGATTATAATAAATTTTATAACTCCAATATCTCATCAGAAGCTTCACTTTCCTGCCTTCTCCATCTATTCCCTCTCTGTCTCTCTGGAAAAAGATTCGCGCACACACGAACATGCAGAGCTCTGTATGCCTACGGAACGGAACTAATTGAATTACACAAATGTTCACGAAAGCCTAACCTAGCCGAATTCCACCCATTCCGAAAAAACACCTAAATTTGAATGGTTATGAGAGCGATTTTCCTTTCA...

XM_057943176.1
TATAACTCCAATATCTCATCAGAAGCTTCACTTTCCTGCCTTCTCCATCTATTCCCTCTCTGTCTCTCTGGAAAAAGATTCGCGCACACACGAACATGCAGAGCTCTGTATGCCTACGGAACGGAACTAATTGAATTACACAAATGTTCACGAAAGCCTAACCTAGCCGAATTCCACCCATTCCGAAAAAACACCTAAATTTGAATGGTTATGAGAGCGATTTTCCTTTCACCAATCCAAAATCATCGATTTCTCCAACA...

CDS

3 records

下载 CDS FASTA

LOC131014980
ATGGAGGGGCCAATGGGGCGGAGATTCTCTGTAGGCTACGCTTTGGCTTCCAAGAAACAGGCAAGCTTCATCCAAATCTCTCTCATAAATGTCGCCAAGGAGAAGAACATCGATCTCATCAAGATCGATTTGGAGAAGCCCTTAATCGAGCAGGGGCCGTTTGATTTGCTCCTCCACAAAATCTACGGCGCGGAGTGGCGGCGGCAGCTCGCCGAGTACTCCGCCAATAACCCTAACGTCCTGATTATCGATTCACCCGA...

Protein

3 records

下载 Protein FASTA

XP_057799144.1
MEGPMGRRFSVGYALASKKQASFIQISLINVAKEKNIDLIKIDLEKPLIEQGPFDLLLHKIYGAEWRRQLAEYSANNPNVLIIDSPDAIERLHNRISMLQVVTELGVLECDDAVSFGIPKQIAAYDARAVAEVNLDGEGLKFPVIAKPLVADGSAKSHKMSLVYNRDGLSKLKPPVVLQEFVNHGGVIFKVYVVGEYVKCVKRKSLPDVNEENLRNLKGLLLFSQVSNLNSVERSRDTYYKMMDLEDGKTENPPMKLLVD...

XP_057799153.1
MEGPMGRRFSVGYALASKKQASFIQISLINVAKEKNIDLIKIDLEKPLIEQGPFDLLLHKIYGAEWRRQLAEYSANNPNVLIIDSPDAIERLHNRISMLQVVTELGVLECDDAVSFGIPKQIAAYDARAVAEVNLDGEGLKFPVIAKPLVADGSAKSHKMSLVYNRDGLSKLKPPVVLQEFVNHGGVIFKVYVVGEYVKCVKRKSLPDVNEENLRNLKGLLLFSQVSNLNSVERSRDTYYKMMDLEDGKTENPPMKLLVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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