Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004121`

染色体: Chr03 坐标: 60070425-60082352 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004121`
名称	SmilChr03G004121
描述	uncharacterized SmilChr03G004121
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60070425 - 60082352 / `-`

ID 对照

NCBI Gene ID	`LOC131014987`
GeneID	`131014987`
locus_tag	`-`
NCBI Name	`LOC131014987`
原始查询	`LOC131014987`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	endonuclease V family protein [Source:NCBI gene (formerly Entrezgene);Acc:829243]; symbol=AT4G31150; hit=AT4G31150; species=arabidopsis; confidence=high
产物	endonuclease V family protein [Source:NCBI gene (formerly Entrezgene);Acc:829243]; symbol=AT4G31150; hit=AT4G31150; species=arabidopsis; confidence=high
Arabidopsis	`AT4G31150` (AT4G31150) endonuclease V family protein [Source:NCBI gene (formerly Entrezgene);Acc:829243] identity=60.2; qcov=0.924; evalue=3.61e-108; confidence=high
Rice	`Os06g0663600` - identity=59; qcov=0.647; evalue=4e-68; confidence=high
GO	GO:0003727 (single-stranded RNA binding); GO:0005730 (nucleolus); GO:0005737 (cytoplasm); GO:0006281 (DNA repair); GO:0016891 (RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism)
KEGG	-
Pfam	PF04493 (Endonuclease_5)
InterPro	-
eggNOG	-
NR	GeneID:131014987

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799151.1`
2	Cytoplasm	细胞质	0.60000	`XP_057799151.1`
3	Cytosol	细胞质基质	0.60000	`XP_057799151.1`
4	Nucleoplasm	核质	0.20000	`XP_057799151.1`
5	Chromosome	染色体	0.00000	`XP_057799151.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60079634`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:60080383`	`GA`	`G`	1bp_deletion	frameshift_variant	2	B75,C33
`Chr3:60080383`	`GA`	`G`	1bp_deletion	CDS_variant	2	B75,C33
`Chr3:60080421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B14,B67,D2
`Chr3:60080771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B14,B67,D2
`Chr3:60081373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:60081986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:60082007`	`T`	`TA`	1bp_insertion	frameshift_variant	6	A6,B101,B126,B33,B54,B7
`Chr3:60082009`	`CT`	`C`	1bp_deletion	frameshift_variant	6	A6,B101,B126,B33,B54,B7
`Chr3:60082192`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,D11
`Chr3:60082195`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B128
`Chr3:60082195`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799151.1

275 aa

138

275

Endonuclease_5

PF04493 Endonuclease_5 61-262 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799151.1`	Pfam	`PF04493`	Endonuclease_5	Domain	61	262	1.1e-63	215.3	Endonuclease V

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943168.1
ACATCGACGTATTTGCCGCAATCGTTAGCTCCATTTTTTTTTTAATTGCATCTCTCATTCTTCACACATTTTCCCTCCCAATTTTCTACGCAATGTCCACGGAAAGAGAGTCTTCTGATTCAGAAGATCAAAACTCTCCCCAATTCTTGAACAAATGGATCGAGGTTCAAGAGTCGCTGAAGAAGCAGCTGAGCACGGACGACAGATTCAGCTGGAAACTGCCCCCAATATGCAAAGATCAAATCTCAGAAGGCGCAGAA...

CDS

1 records

下载 CDS FASTA

LOC131014987
ATGTCCACGGAAAGAGAGTCTTCTGATTCAGAAGATCAAAACTCTCCCCAATTCTTGAACAAATGGATCGAGGTTCAAGAGTCGCTGAAGAAGCAGCTGAGCACGGACGACAGATTCAGCTGGAAACTGCCCCCAATATGCAAAGATCAAATCTCAGAAGGCGCAGAAGAGAATCGAGATTCCAACCGCGGCAAATTCCTCAAATATGTTGGTGGGGCTGACTTGAGTTTCTCCAAAACTGATCCATCAATTGCGTGTGC...

Protein

1 records

下载 Protein FASTA

XP_057799151.1
MSTERESSDSEDQNSPQFLNKWIEVQESLKKQLSTDDRFSWKLPPICKDQISEGAEENRDSNRGKFLKYVGGADLSFSKTDPSIACATLVVLDVSTLEVVHEVSKVVELRVPYVPGFLAFREAPVLLELLEKLKNTALPLYPQVLMVDGNGLLHPRGFGLACHLGVLADLPTIGIGKNLHHVDGLTQSGARQLLEANGNSCNDIFTLIGDSGSTLGAAMRSTVGSLKPIFISVGHRISLASAIEIVKLSCRYRVPEPIRQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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