Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002281`

染色体: Chr01 坐标: 39607121-39613937 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002281`
名称	SmilChr01G002281
描述	uncharacterized SmilChr01G002281
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	39607121 - 39613937 / `+`

ID 对照

NCBI Gene ID	`LOC131015000`
GeneID	`131015000`
locus_tag	`-`
NCBI Name	`LOC131015000`
原始查询	`LOC131015000`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NDR1/HIN1-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:840126]; symbol=NHL8; hit=AT1G32340; species=arabidopsis; confidence=high
产物	NDR1/HIN1-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:840126]; symbol=NHL8; hit=AT1G32340; species=arabidopsis; confidence=high
Arabidopsis	`AT1G32340` (NHL8) NDR1/HIN1-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:840126] identity=59.9; qcov=0.876; evalue=0; confidence=high
Rice	`Os04g0593600` - identity=56.7; qcov=0.343; evalue=1.63e-84; confidence=low
GO	GO:0000151 (ubiquitin ligase complex); GO:0000209 (protein polyubiquitination); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032436 (positive regulation of proteasomal ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF01485 (IBR); PF05773 (RWD); PF13639 (zf-RING_2); PF22191 (IBR_1); PF26200 (Rcat_RNF216)
InterPro	-
eggNOG	-
NR	GeneID:131015000

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799173.1`
2	Cytoplasm	细胞质	0.40000	`XP_057799173.1`
3	Cytosol	细胞质基质	0.40000	`XP_057799173.1`
4	Chromosome	染色体	0.00000	`XP_057799173.1`
5	Centromere	着丝粒	0.00000	`XP_057799173.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:39607320`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,A9,B65
`Chr1:39607621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B61,B65
`Chr1:39609208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,A4,C35,C65
`Chr1:39609302`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr1:39609408`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,A21,B130,B54
`Chr1:39609428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,A9,B61,B65
`Chr1:39613578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B28,B76,C56
`Chr1:39613584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B56,B96,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799173.1

627 aa

314

627

RWD

zf-RING_2

IBR

Rcat_RNF216

IBR_1

PF05773 RWD 128-262 aa PF13639 zf-RING_2 321-356 aa PF01485 IBR 392-449 aa PF01485 IBR 490-528 aa PF26200 Rcat_RNF216 492-536 aa PF22191 IBR_1 494-527 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799173.1`	Pfam	`PF05773`	RWD	Domain	128	262	5.4e-23	82.0	RWD domain
`XP_057799173.1`	Pfam	`PF13639`	zf-RING_2	Domain	321	356	1.9e-06	28.7	Ring finger domain
`XP_057799173.1`	Pfam	`PF01485`	IBR	Domain	392	449	6.6e-15	55.6	IBR domain, a half RING-finger domain
`XP_057799173.1`	Pfam	`PF01485`	IBR	Domain	490	528	6.6e-15	55.6	IBR domain, a half RING-finger domain
`XP_057799173.1`	Pfam	`PF26200`	Rcat_RNF216	Domain	492	536	3.5e-12	47.4	RNF216 Rcat domain
`XP_057799173.1`	Pfam	`PF22191`	IBR_1	Domain	494	527	2.6e-13	50.3	IBR domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943190.1
TGTACAAGTACGATAGATTGGTAGTACGAATAATAGTATAATACCTAACCGCCTCAACCGAGAGAAGAAAGACATAGGTCGCATCAACGACAGTCATCGACGATCTCAGTCATGTCTTCTACGAGAGGAGCCTATAGAGGTAGGAGGCATAATTCAAAGCAGAACTGGACTGTTAGATCCCTTGTTGATCGCCACTCCAGTGAAACCTCTTCATCACCAGAATCCTGCTCCAGTTTGCATCGAAAACGCCCTCAGGATCA...

CDS

1 records

下载 CDS FASTA

LOC131015000
ATGTCTTCTACGAGAGGAGCCTATAGAGGTAGGAGGCATAATTCAAAGCAGAACTGGACTGTTAGATCCCTTGTTGATCGCCACTCCAGTGAAACCTCTTCATCACCAGAATCCTGCTCCAGTTTGCATCGAAAACGCCCTCAGGATCAAGGAGATACGAATTGGAACCAACAGCATGAGGGTTCTAGCTCAGAACCTCAACTTGTTCCAAATTCCGGCGGTGTAGATGGAAAAGAAGAGGCTTCTGCATCTGCTGGTGA...

Protein

1 records

下载 Protein FASTA

XP_057799173.1
MSSTRGAYRGRRHNSKQNWTVRSLVDRHSSETSSSPESCSSLHRKRPQDQGDTNWNQQHEGSSSEPQLVPNSGGVDGKEEASASAGEKASNSHNDEIHEDEIVKRLEELRFSAEELELTEALLSINKQLQEDELLAMESIYGDKFVILENQSGMKYFQAHIHVEVPKELLVTAKVITSSTFHQDRDGNSSDFSYSFQVEFLPPIILTCLLPKSYPSDCPPYFTISVQWLGSAKISDLCRKLDSIWLEQAGQEVIYQWLEW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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