Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004132`

染色体: Chr03 坐标: 60155499-60159332 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004132`
名称	SmilChr03G004132
描述	cryptochrome DASH, chloroplastic/mitochondrial
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60155499 - 60159332 / `-`

ID 对照

NCBI Gene ID	`LOC131015002`
GeneID	`131015002`
locus_tag	`-`
NCBI Name	`LOC131015002`
原始查询	`LOC131015002`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cryptochrome DASH, chloroplastic/mitochondrial
产物	cryptochrome DASH%2C chloroplastic/mitochondrial
Arabidopsis	`AT5G24850` (CRY3) cryptochrome 3 [Source:NCBI gene (formerly Entrezgene);Acc:832554] identity=68.8; qcov=0.935; evalue=0; confidence=high
Rice	`Os06g0661800` - identity=70.4; qcov=0.938; evalue=0; confidence=high
GO	GO:0000719 (photoreactive repair); GO:0003677 (DNA binding); GO:0003913 (DNA photolyase activity); GO:0071949 (FAD binding)
KEGG	-
Pfam	PF00875 (DNA_photolyase); PF03441 (FAD_binding_7)
InterPro	-
eggNOG	-
NR	GeneID:131015002

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057799177.1`
2	Chloroplast	叶绿体	1.00000	`XP_057799178.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057799177.1`
4	Nucleus	细胞核	0.00000	`XP_057799177.1`
5	Chromosome	染色体	0.00000	`XP_057799177.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60155947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B12,B20,C38
`Chr3:60155987`	`C`	`CT`	1bp_insertion	frameshift_variant	126	A10,A13,A14,A16,A20,A21,A22,A24,A25,A6,A9,B1,B10,B100,B101,B103,B104,B105,B107,B108,B109,B11,B114,B115,B119,B122,B124,B125,B126,B127,B13,B133,B135,B137,B139,B14,B140,B17,B18,B19,B20,B21,B22,B24,B25,B28,B3,B31,B33,B36,B38,B44,B46,B50,B51,B54,B57,B58,B61,B64,B65,B67,B68,B69,B7,B72,B73,B74,B78,B79,B8,B80,B82,B83,B84,B85,B89,B9,B91,B93,B97,B98,C16,C17,C2,C22,C28,C29,C30,C31,C33,C39,C41,C44,C46,C48,C49,C5,C51,C52,C54,C55,C56,C57,C58,C61,C63,C64,C65,C66,C7,C71,C72,C75,C77,C79,C80,C82,C83,C85,C86,C87,C9,D11,D5,D8
`Chr3:60156652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:60156830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:60157161`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,C60
`Chr3:60157338`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr3:60157390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:60157732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:60158014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:60158029`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr3:60158242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B64,B8,C33,C40
`Chr3:60158258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799177.1

570 aa

285

570

DNA_photolyase

FAD_binding_7

PF00875 DNA_photolyase 75-253 aa PF03441 FAD_binding_7 370-530 aa

XP_057799178.1

512 aa

256

512

DNA_photolyase

FAD_binding_7

PF00875 DNA_photolyase 75-253 aa PF03441 FAD_binding_7 370-501 aa

XP_057799179.1

504 aa

252

504

DNA_photolyase

FAD_binding_7

PF00875 DNA_photolyase 75-253 aa PF03441 FAD_binding_7 370-499 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799177.1`	Pfam	`PF00875`	DNA_photolyase	Domain	75	253	2.6e-33	116.0	DNA photolyase
`XP_057799177.1`	Pfam	`PF03441`	FAD_binding_7	Domain	370	530	2.6e-52	177.9	FAD binding domain of DNA photolyase
`XP_057799178.1`	Pfam	`PF00875`	DNA_photolyase	Domain	75	253	2e-33	116.4	DNA photolyase
`XP_057799178.1`	Pfam	`PF03441`	FAD_binding_7	Domain	370	501	1.7e-40	139.3	FAD binding domain of DNA photolyase
`XP_057799179.1`	Pfam	`PF00875`	DNA_photolyase	Domain	75	253	1.9e-33	116.4	DNA photolyase
`XP_057799179.1`	Pfam	`PF03441`	FAD_binding_7	Domain	370	499	3.2e-40	138.4	FAD binding domain of DNA photolyase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057943194.1
CCTCTTGTGAAGTCGAATTCGGACAAACCATGATCCAAAATTTCACCATCATTTCCAAATTAAACCCTCTCTTTTCCCCTCCCAAAATCCATCTGCGTTTTTCCAGCATGCTGTGCTCCAATGCAGTTAGAGCCGCAAACACAGTGCACCCGGTTCCGGGTCTCGGGTCGGACGAGATGGAGCGGGTCGCCCACCAGACCTTGGCGAGGTACACCTCCGAAGCAGCGCCGCAGAGGAAAGGAAAAGGAGTTGCCATCGTT...

XM_057943196.1
CCTCTTGTGAAGTCGAATTCGGACAAACCATGATCCAAAATTTCACCATCATTTCCAAATTAAACCCTCTCTTTTCCCCTCCCAAAATCCATCTGCGTTTTTCCAGCATGCTGTGCTCCAATGCAGTTAGAGCCGCAAACACAGTGCACCCGGTTCCGGGTCTCGGGTCGGACGAGATGGAGCGGGTCGCCCACCAGACCTTGGCGAGGTACACCTCCGAAGCAGCGCCGCAGAGGAAAGGAAAAGGAGTTGCCATCGTT...

CDS

3 records

下载 CDS FASTA

LOC131015002
ATGATCCAAAATTTCACCATCATTTCCAAATTAAACCCTCTCTTTTCCCCTCCCAAAATCCATCTGCGTTTTTCCAGCATGCTGTGCTCCAATGCAGTTAGAGCCGCAAACACAGTGCACCCGGTTCCGGGTCTCGGGTCGGACGAGATGGAGCGGGTCGCCCACCAGACCTTGGCGAGGTACACCTCCGAAGCAGCGCCGCAGAGGAAAGGAAAAGGAGTTGCCATCGTTTGGTTCAGAAACGATTTGAGAATTTTGGA...

Protein

3 records

下载 Protein FASTA

XP_057799177.1
MIQNFTIISKLNPLFSPPKIHLRFSSMLCSNAVRAANTVHPVPGLGSDEMERVAHQTLARYTSEAAPQRKGKGVAIVWFRNDLRILDNEVLHKAWLSSEAVLPVYCVDPRLFGSTHHFDFPKTGALRAQFLIECLADLKQNLMKRGLNLLIQQGKPEHILPSLAKAYGVHTVYAQKETCSEEVNVETLVSKNLKKVVLPLAEGVSAKHKSTNVANLDLIWGCTMYHIDDLPFSCTSLPDIYTQFRKLVESKSTIRGCIKA...

XP_057799178.1
MIQNFTIISKLNPLFSPPKIHLRFSSMLCSNAVRAANTVHPVPGLGSDEMERVAHQTLARYTSEAAPQRKGKGVAIVWFRNDLRILDNEVLHKAWLSSEAVLPVYCVDPRLFGSTHHFDFPKTGALRAQFLIECLADLKQNLMKRGLNLLIQQGKPEHILPSLAKAYGVHTVYAQKETCSEEVNVETLVSKNLKKVVLPLAEGVSAKHKSTNVANLDLIWGCTMYHIDDLPFSCTSLPDIYTQFRKLVESKSTIRGCIKA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器