当前解析结果
SmilChr03G004153| 统一新 Gene ID | SmilChr03G004153 |
|---|---|
| 名称 | SmilChr03G004153 |
| 描述 | glutamate receptor 2.7-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60330515 - 60335182 / + |
| NCBI Gene ID | LOC131015022 |
|---|---|
| GeneID | 131015022 |
| locus_tag | - |
| NCBI Name | LOC131015022 |
| 原始查询 | LOC131015022 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamate receptor 2.7-like |
| 产物 | glutamate receptor 2.7-like |
| Arabidopsis | AT2G29120 (GLR2.7)glutamate receptor 2.7 [Source:NCBI gene (formerly Entrezgene);Acc:817460] identity=48.9; qcov=0.99; evalue=0; confidence=high |
| Rice | Os09g0429000 (OsGLR2.1)- identity=49.5; qcov=0.851; evalue=0; confidence=high |
| GO | GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015022 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799199.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799199.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799199.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799199.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799199.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60330713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr3:60330775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B76,B95 |
Chr3:60330782 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:60330798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,C18,C85 |
Chr3:60332056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr3:60332100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:60332287 |
G |
GAC |
2bp_insertion | frameshift_variant | 25 | A14,B103,B108,B109,B122,B25,B28,B46,B49,B55,B60,B70,B75,B78,B79,B83,C16,C2,C26,C38,C42,C44,C71,C80,D7 |
Chr3:60332288 |
A |
ACG |
2bp_insertion | frameshift_variant | 36 | A11,B115,B118,B125,B127,B134,B14,B16,B28,B30,B42,B53,B68,B70,B74,B76,B78,B8,B84,B88,B95,B98,C1,C11,C29,C33,C39,C5,C50,C61,C69,C74,C8,C84,C87,D5 |
Chr3:60332290 |
AAG |
A |
2bp_deletion | frameshift_variant | 58 | A11,A14,B103,B108,B109,B115,B118,B122,B125,B127,B134,B14,B16,B25,B28,B30,B42,B46,B49,B53,B55,B60,B68,B70,B74,B75,B76,B78,B79,B8,B83,B84,B88,B95,B98,C1,C11,C16,C2,C26,C29,C33,C38,C39,C42,C44,C5,C50,C61,C69,C71,C74,C8,C80,C84,C87,D5,D7 |
Chr3:60332312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B30 |
Chr3:60332384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B122,B24,C23 |
Chr3:60332392 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B135,B18,B82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799199.1PF13458
Peripla_BP_6 36-398 aa
PF01094
ANF_receptor 55-407 aa
PF10613
Lig_chan-Glu_bd 487-575 aa
PF00497
SBP_bac_3 529-815 aa
PF00060
Lig_chan 593-847 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799199.1 |
Pfam | PF13458 |
Peripla_BP_6 | Family | 36 | 398 | 3.1e-19 | 70.6 | Periplasmic binding protein |
XP_057799199.1 |
Pfam | PF01094 |
ANF_receptor | Domain | 55 | 407 | 1.4e-83 | 281.6 | Receptor family ligand binding region |
XP_057799199.1 |
Pfam | PF10613 |
Lig_chan-Glu_bd | Domain | 487 | 575 | 9.7e-12 | 45.7 | Ligated ion channel L-glutamate- and glycine-binding site |
XP_057799199.1 |
Pfam | PF00497 |
SBP_bac_3 | Domain | 529 | 815 | 3.4e-09 | 37.3 | Bacterial extracellular solute-binding proteins, family 3 |
XP_057799199.1 |
Pfam | PF00060 |
Lig_chan | Family | 593 | 847 | 1.6e-37 | 129.3 | Ligand-gated ion channel |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。