Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004155`

染色体: Chr03 坐标: 60337169-60341245 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004155`
名称	SmilChr03G004155
描述	glutamate receptor 2.7-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60337169 - 60341245 / `+`

ID 对照

NCBI Gene ID	`LOC131015024`
GeneID	`131015024`
locus_tag	`-`
NCBI Name	`LOC131015024`
原始查询	`LOC131015024`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutamate receptor 2.7-like
产物	glutamate receptor 2.7-like
Arabidopsis	`AT2G29120` (GLR2.7) glutamate receptor 2.7 [Source:NCBI gene (formerly Entrezgene);Acc:817460] identity=51.8; qcov=0.935; evalue=0; confidence=high
Rice	`Os09g0429000` (OsGLR2.1) - identity=47.4; qcov=0.956; evalue=0; confidence=high
GO	GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6)
InterPro	-
eggNOG	-
NR	GeneID:131015024

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799200.1`
2	Nucleus	细胞核	0.00000	`XP_057799200.1`
3	Chromosome	染色体	0.00000	`XP_057799200.1`
4	Centromere	着丝粒	0.00000	`XP_057799200.1`
5	Chromatin	染色质	0.00000	`XP_057799200.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60337401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B28,C87
`Chr3:60337453`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B101
`Chr3:60337453`	`GC`	`G`	1bp_deletion	CDS_variant	1	B101
`Chr3:60337580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B131,B132,B133,C55
`Chr3:60337616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,B103,B82,C2
`Chr3:60338129`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,B98,C61,C74
`Chr3:60338130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B30,B98,C61,C74
`Chr3:60338242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B20,C49,C53,C57
`Chr3:60338247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:60338285`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C5,D10
`Chr3:60338307`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:60338413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799200.1

992 aa

496

992

Peripla_BP_6

ANF_receptor

SBP_bac_3

Lig_chan

PF13458 Peripla_BP_6 30-392 aa PF01094 ANF_receptor 49-401 aa PF00497 SBP_bac_3 569-866 aa PF00060 Lig_chan 621-898 aa

XP_057799201.1

969 aa

484

969

Peripla_BP_6

ANF_receptor

SBP_bac_3

Lig_chan

PF13458 Peripla_BP_6 30-392 aa PF01094 ANF_receptor 49-401 aa PF00497 SBP_bac_3 569-843 aa PF00060 Lig_chan 621-875 aa

XP_057799202.1

958 aa

479

958

Peripla_BP_6

ANF_receptor

Lig_chan-Glu_bd

SBP_bac_3

Lig_chan

PF13458 Peripla_BP_6 30-392 aa PF01094 ANF_receptor 49-401 aa PF10613 Lig_chan-Glu_bd 481-570 aa PF00497 SBP_bac_3 522-832 aa PF00060 Lig_chan 587-864 aa

XP_057799203.1

935 aa

468

935

Peripla_BP_6

ANF_receptor

Lig_chan-Glu_bd

SBP_bac_3

Lig_chan

PF13458 Peripla_BP_6 30-392 aa PF01094 ANF_receptor 49-401 aa PF10613 Lig_chan-Glu_bd 481-570 aa PF00497 SBP_bac_3 522-809 aa PF00060 Lig_chan 587-841 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799200.1`	Pfam	`PF13458`	Peripla_BP_6	Family	30	392	1.5e-21	78.2	Periplasmic binding protein
`XP_057799200.1`	Pfam	`PF01094`	ANF_receptor	Domain	49	401	1.1e-87	295.1	Receptor family ligand binding region
`XP_057799200.1`	Pfam	`PF00497`	SBP_bac_3	Domain	569	866	1.1e-07	32.3	Bacterial extracellular solute-binding proteins, family 3
`XP_057799200.1`	Pfam	`PF00060`	Lig_chan	Family	621	898	7.8e-34	117.3	Ligand-gated ion channel
`XP_057799201.1`	Pfam	`PF13458`	Peripla_BP_6	Family	30	392	1.5e-21	78.2	Periplasmic binding protein
`XP_057799201.1`	Pfam	`PF01094`	ANF_receptor	Domain	49	401	1.1e-87	295.1	Receptor family ligand binding region
`XP_057799201.1`	Pfam	`PF00497`	SBP_bac_3	Domain	569	843	8.7e-08	32.7	Bacterial extracellular solute-binding proteins, family 3
`XP_057799201.1`	Pfam	`PF00060`	Lig_chan	Family	621	875	3.1e-34	118.6	Ligand-gated ion channel
`XP_057799202.1`	Pfam	`PF13458`	Peripla_BP_6	Family	30	392	1.4e-21	78.3	Periplasmic binding protein
`XP_057799202.1`	Pfam	`PF01094`	ANF_receptor	Domain	49	401	1e-87	295.2	Receptor family ligand binding region
`XP_057799202.1`	Pfam	`PF10613`	Lig_chan-Glu_bd	Domain	481	570	1.2e-11	45.4	Ligated ion channel L-glutamate- and glycine-binding site
`XP_057799202.1`	Pfam	`PF00497`	SBP_bac_3	Domain	522	832	2.1e-10	41.2	Bacterial extracellular solute-binding proteins, family 3
`XP_057799202.1`	Pfam	`PF00060`	Lig_chan	Family	587	864	7.5e-34	117.4	Ligand-gated ion channel
`XP_057799203.1`	Pfam	`PF13458`	Peripla_BP_6	Family	30	392	1.3e-21	78.3	Periplasmic binding protein
`XP_057799203.1`	Pfam	`PF01094`	ANF_receptor	Domain	49	401	9.9e-88	295.3	Receptor family ligand binding region
`XP_057799203.1`	Pfam	`PF10613`	Lig_chan-Glu_bd	Domain	481	570	1.2e-11	45.5	Ligated ion channel L-glutamate- and glycine-binding site
`XP_057799203.1`	Pfam	`PF00497`	SBP_bac_3	Domain	522	809	1.7e-10	41.5	Bacterial extracellular solute-binding proteins, family 3
`XP_057799203.1`	Pfam	`PF00060`	Lig_chan	Family	587	841	3e-34	118.7	Ligand-gated ion channel

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057943217.1
TCATCTCGCATTCTCTCTCACAAACAGATTTCAATGTAACAATGAACAATATTATGTTGACACAAAAAAAAAAAAAATTACACAGCTGATTGTACTAATTTTCTTTGTTGCCATCTGTGGATGTGACTGTTGACGCATATATAACTGGTAACTATGCCCAAAATAATCATCAACATATGAATTTTGAGATCTGAAAATTTTGCACAAGATGAAGTTGGAGGCTCGTCTGGTTGTCTTGGTTCTCTTGTTGAACACTTTGT...

XM_057943219.1
TCATCTCGCATTCTCTCTCACAAACAGATTTCAATGTAACAATGAACAATATTATGTTGACACAAAAAAAAAAAAAATTACACAGCTGATTGTACTAATTTTCTTTGTTGCCATCTGTGGATGTGACTGTTGACGCATATATAACTGGTAACTATGCCCAAAATAATCATCAACATATGAATTTTGAGATCTGAAAATTTTGCACAAGATGAAGTTGGAGGCTCGTCTGGTTGTCTTGGTTCTCTTGTTGAACACTTTGT...

CDS

4 records

下载 CDS FASTA

LOC131015024
ATGAAGTTGGAGGCTCGTCTGGTTGTCTTGGTTCTCTTGTTGAACACTTTGTCCATGAATAGCGCCACGGCGCAGAGCACGCCTTTCCCTGTGAGAGTTGGAGTGGTGCTAGACATGGACAACTATGTCGGAAAAATGGGGTTGAACTGCATCACAATGGCGCTCTCGGATTTCTACACCAGAAATGGCCACTACCGGACTCGGCTGGTTCTCAACAAGAGGGACTCCGAGAGAGACGTCGTTGGGGCAGCTGCTGCAGC...

Protein

4 records

下载 Protein FASTA

XP_057799200.1
MKLEARLVVLVLLLNTLSMNSATAQSTPFPVRVGVVLDMDNYVGKMGLNCITMALSDFYTRNGHYRTRLVLNKRDSERDVVGAAAAALDLLKNVEVQAVIGPLSSMQANFMINLGNKSQVPIITFSATSPSLLSIRSPYFVRAALSDSSQVKAIAAIVQAFGWREVVPIYVDNEFGQGIIPYLADALEQVNVRIPYRSTIPSSATDDEIVAELYKLMTMQTRVFIVHMRTTLGSRLFTKAKLLGMMSEDYVWIITDGMTN...

XP_057799201.1
MKLEARLVVLVLLLNTLSMNSATAQSTPFPVRVGVVLDMDNYVGKMGLNCITMALSDFYTRNGHYRTRLVLNKRDSERDVVGAAAAALDLLKNVEVQAVIGPLSSMQANFMINLGNKSQVPIITFSATSPSLLSIRSPYFVRAALSDSSQVKAIAAIVQAFGWREVVPIYVDNEFGQGIIPYLADALEQVNVRIPYRSTIPSSATDDEIVAELYKLMTMQTRVFIVHMRTTLGSRLFTKAKLLGMMSEDYVWIITDGMTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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