Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G002286

染色体: Chr01 坐标: 39664252-39667649 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G002286
名称SmilChr01G002286
描述dolichol-phosphate mannose synthase subunit 2
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向39664252 - 39667649 / -

ID 对照

NCBI Gene IDLOC131015044
GeneID131015044
locus_tag-
NCBI NameLOC131015044
原始查询LOC131015044

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述dolichol-phosphate mannose synthase subunit 2
产物dolichol-phosphate mannose synthase subunit 2
ArabidopsisAT1G74340 (DPMS2)
dolichol phosphate-mannose biosynthesis regulatory protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:843775]
identity=87.5; qcov=1; evalue=9.93e-41; confidence=medium
RiceOs11g0311550
-
identity=76.7; qcov=0.912; evalue=2.05e-36; confidence=medium
GOGO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process); GO:0019348 (GO:0019348); GO:0030234 (enzyme regulator activity); GO:0033185 (dolichol-phosphate-mannose synthase complex)
KEGGsmil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
PfamPF07297 (DPM2)
InterPro-
eggNOG-
NRGeneID:131015044

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057799227.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057799227.1
3 Nucleus 细胞核 0.00000 XP_057799227.1
4 Chromosome 染色体 0.00000 XP_057799227.1
5 Centromere 着丝粒 0.00000 XP_057799227.1

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变,或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057799227.1
80 aa
N
1
40
80
DPM2
C
PF07297 DPM2 4-78 aa
XP_057799234.1
80 aa
N
1
40
80
DPM2
C
PF07297 DPM2 4-78 aa
XP_057799240.1
80 aa
N
1
40
80
DPM2
C
PF07297 DPM2 4-78 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799227.1 Pfam PF07297 DPM2 Family 4 78 1.8e-34 118.5 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
XP_057799234.1 Pfam PF07297 DPM2 Family 4 78 1.8e-34 118.5 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
XP_057799240.1 Pfam PF07297 DPM2 Family 4 78 1.8e-34 118.5 Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057943251.1
ATTAGAAGTATTGGGCCTAAACGACGGTTGGGTAAATCGATTCCAACTAATAAAAATTTGGTCAATTAACGGGCGATTTGGGCGCCTCTAACCTCTAGCTAAGCTGGGGGCGGAATGGAATGGACTCTGTTGAAACAAAAGATTAGCTCTTTCATCACTAACCCAAATTCTGATCTAATCAACCATCTCCTGCTGTGAACTGAATTATTCTCTTCTTCTGTAACGAGTAATTTCAGGACAACTTTTAGAAGCATTTTTGA...
XM_057943244.1
GACGGTTGGGTAAATCGATTCCAACTAATAAAAATTTGGTCAATTAACGGGCGATTTGGGCGCCTCTAACCTCTAGCTAAGCTGGGGGCGGAATGGAATGGACTCTGTTGAAACAAAAGATTAGCTCTTTCATCACTAACCCAAATTCTGATCTAATCAACCATCTCCTGCTGTGAACTGAATTATTCTCTTCTTCTGTAACGAGTAATTTCAGGAGCCAGGTCAATCTCTGTAATGGAACTAGCAGACAGGGCTGTTGG...

CDS

3 records

下载 CDS FASTA
LOC131015044
ATGGAACTAGCAGACAGGGCTGTTGGATTGCTTTTGTCAGTCATCAGTTTATCCATATTCACATATTATACTTTCTGGGTTATCATCTTGCCTTTTGTTGACAGTGACCATTTTGTGCACAAGTACTTCCTGCCTCAAGAATATGCCATTCTCATTCCTGTATATGCTGGTGTTGCTCTGATCTGCTTACTTTCTGTTTTTATCGGCTATGTGATGCTGAAATCCAAAAAGAAAAAGGCATAG
LOC131015044
ATGGAACTAGCAGACAGGGCTGTTGGATTGCTTTTGTCAGTCATCAGTTTATCCATATTCACATATTATACTTTCTGGGTTATCATCTTGCCTTTTGTTGACAGTGACCATTTTGTGCACAAGTACTTCCTGCCTCAAGAATATGCCATTCTCATTCCTGTATATGCTGGTGTTGCTCTGATCTGCTTACTTTCTGTTTTTATCGGCTATGTGATGCTGAAATCCAAAAAGAAAAAGGCATAG

Protein

3 records

下载 Protein FASTA
XP_057799227.1
MELADRAVGLLLSVISLSIFTYYTFWVIILPFVDSDHFVHKYFLPQEYAILIPVYAGVALICLLSVFIGYVMLKSKKKKA
XP_057799234.1
MELADRAVGLLLSVISLSIFTYYTFWVIILPFVDSDHFVHKYFLPQEYAILIPVYAGVALICLLSVFIGYVMLKSKKKKA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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