Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004181`

染色体: Chr03 坐标: 60534460-60538815 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004181`
名称	SmilChr03G004181
描述	uncharacterized SmilChr03G004181
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60534460 - 60538815 / `+`

ID 对照

NCBI Gene ID	`LOC131015053`
GeneID	`131015053`
locus_tag	`-`
NCBI Name	`LOC131015053`
原始查询	`LOC131015053`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837499]; symbol=AT1G09710; hit=AT1G09710; species=arabidopsis; confidence=medium
产物	Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837499]; symbol=AT1G09710; hit=AT1G09710; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G09710` (AT1G09710) Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837499] identity=44; qcov=0.466; evalue=2.42e-63; confidence=medium
Rice	`Os02g0551400` - identity=39.7; qcov=0.476; evalue=6.64e-43; confidence=medium
GO	-
KEGG	-
Pfam	PF00249 (Myb_DNA-binding)
InterPro	-
eggNOG	-
NR	GeneID:131015053

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799232.1`
2	Chromosome	染色体	0.00000	`XP_057799232.1`
3	Centromere	着丝粒	0.00000	`XP_057799232.1`
4	Chromatin	染色质	0.00000	`XP_057799232.1`
5	Telomere	端粒	0.00000	`XP_057799232.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60534586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B39,C77
`Chr3:60536173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,B41,B74
`Chr3:60536196`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B83
`Chr3:60536322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B41,B74
`Chr3:60536376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,C1
`Chr3:60537457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:60537476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr3:60537649`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B3,B83
`Chr3:60537831`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B83,C32
`Chr3:60537973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B121,B22,C46,D7
`Chr3:60537980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr3:60538057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799232.1

610 aa

305

610

Myb_DNA-binding

PF00249 Myb_DNA-binding 203-250 aa

XP_057799233.1

609 aa

304

609

Myb_DNA-binding

PF00249 Myb_DNA-binding 203-250 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799232.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	203	250	1.6e-05	25.6	Myb-like DNA-binding domain
`XP_057799233.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	203	250	1.6e-05	25.7	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943249.1
ACTATAATACCTCTATTCTGGTTTCATATTCTCTATAAAGCCTCTATTCTCATTTCTCTCTCTCTCTCCAAGATTTTATGCCACTCCAACTGAGGAAAGCAATAGCTTCCTGTTAATTCAATGGTTGACAAATCGAAGAAGGGGAAGAAGGGCACCTTCGGTGAAGATGATATGTCTTCCGTCTTGGCGAGATACTCCATGAATACGGTGCTCGGGTTGCTGCAAGAGGTGGAGCAAGCCGGCGGAGCGAAGATTGATTG...

XM_057943250.1
ACCTCTATTCTGGTTTCATATTCTCTATAAAGCCTCTATTCTCATTTCTCTCTCTCTCTCCAAGATTTTATGCCACTCCAACTGAGGAAAGCAATAGCTTCCTGTTAATTCAATGGTTGACAAATCGAAGAAGGGGAAGAAGGGCACCTTCGGTGAAGATGATATGTCTTCCGTCTTGGCGAGATACTCCATGAATACGGTGCTCGGGTTGCTGCAAGAGGTGGAGCAAGCCGGCGGAGCGAAGATTGATTGGCACGAGG...

CDS

2 records

下载 CDS FASTA

LOC131015053
ATGGTTGACAAATCGAAGAAGGGGAAGAAGGGCACCTTCGGTGAAGATGATATGTCTTCCGTCTTGGCGAGATACTCCATGAATACGGTGCTCGGGTTGCTGCAAGAGGTGGAGCAAGCCGGCGGAGCGAAGATTGATTGGCACGAGGCGGTGAAGAAGTCCTCCACCGGAATTTCATGCGCGCGGGAGTACCAGATGCTGTGGCGCCACCTCGCTTACGGCGAAGCCCTAACTGATCAACTCGACGACGATGCTGAGCC...

Protein

2 records

下载 Protein FASTA

XP_057799232.1
MVDKSKKGKKGTFGEDDMSSVLARYSMNTVLGLLQEVEQAGGAKIDWHEAVKKSSTGISCAREYQMLWRHLAYGEALTDQLDDDAEPIDYDSDLEYEVEPSPAVGREASVEAAACVKVLIASGYPNNSQLPNNSTIEAPLTINIPNTKAACASSDGSHLSDMMRGMNVSIPVSVQKQPLSSGVIGEKRPIALAQMNLPSRRRRRSWSTEEDAKLTASVLKHGERSWANIALLDFKNDRRANELSQRWSNLRKKQGNTKGG...

XP_057799233.1
MVDKSKKGKKGTFGEDDMSSVLARYSMNTVLGLLQEVEQAGGAKIDWHEAVKKSSTGISCAREYQMLWRHLAYGEALTDQLDDDAEPIDYDSDLEYEVEPSPAVGREASVEAAACVKVLIASGYPNNSQLPNNSTIEAPLTINIPNTKAACASSDGSHLSDMMRGMNVSIPVSVQKQPLSSGVIGEKRPIALAQMNLPSRRRRRSWSTEEDAKLTASVLKHGERSWANIALLDFKNDRRANELSQRWSNLRKKQGNTKGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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