Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004188`

染色体: Chr03 坐标: 60565548-60569059 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004188`
名称	SmilChr03G004188
描述	probable E3 ubiquitin-protein ligase RHG1A
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60565548 - 60569059 / `+`

ID 对照

NCBI Gene ID	`LOC131015061`
GeneID	`131015061`
locus_tag	`-`
NCBI Name	`LOC131015061`
原始查询	`LOC131015061`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase RHG1A
产物	probable E3 ubiquitin-protein ligase RHG1A
Arabidopsis	`AT5G10650` (AT5G10650) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830929] identity=38; qcov=1.04; evalue=4.11e-86; confidence=medium
Rice	`Os06g0695600` (OsMAR1) - identity=44.2; qcov=0.663; evalue=6.96e-78; confidence=medium
GO	GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:131015061

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799243.1`
2	Cytoplasm	细胞质	0.60000	`XP_057799243.1`
3	Nucleus membrane	核膜	0.20000	`XP_057799243.1`
4	Chromosome	染色体	0.00000	`XP_057799243.1`
5	Centromere	着丝粒	0.00000	`XP_057799243.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60566783`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,A9
`Chr3:60566787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,B40,B69
`Chr3:60566792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:60566810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr3:60566922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C40,C43,C5
`Chr3:60566951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C40,C43,C5
`Chr3:60566990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,B27,C47
`Chr3:60567039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B55,D10
`Chr3:60567079`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B55,D10
`Chr3:60567113`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr3:60567204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr3:60567440`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B13,B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799243.1

549 aa

274

549

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 494-536 aa PF13639 zf-RING_2 494-537 aa PF00097 zf-C3HC4 495-536 aa

XP_057799244.1

549 aa

274

549

zf-C3HC4_2

zf-RING_2

zf-C3HC4

PF13923 zf-C3HC4_2 494-536 aa PF13639 zf-RING_2 494-537 aa PF00097 zf-C3HC4 495-536 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799243.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	494	536	3.1e-08	34.0	Zinc finger, C3HC4 type (RING finger)
`XP_057799243.1`	Pfam	`PF13639`	zf-RING_2	Domain	494	537	9.9e-12	45.7	Ring finger domain
`XP_057799243.1`	Pfam	`PF00097`	zf-C3HC4	Domain	495	536	4.3e-07	30.4	Zinc finger, C3HC4 type (RING finger)
`XP_057799244.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	494	536	3.1e-08	34.0	Zinc finger, C3HC4 type (RING finger)
`XP_057799244.1`	Pfam	`PF13639`	zf-RING_2	Domain	494	537	9.9e-12	45.7	Ring finger domain
`XP_057799244.1`	Pfam	`PF00097`	zf-C3HC4	Domain	495	536	4.3e-07	30.4	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943260.1
TTCATGTTTTATGGTTACTGCTAACTTTTTCTTAATATTAATATTAATATTCCCCAATTTGCCACGAACACATATATACTCATACGCACGCGCACGTATCTATACTTACATTTCTCAATTTCCATTTTCATTTTAAAGAGACTTTTCTCTCTCCCTCTCTCTCTAAAAAAGGCTAAGCCCCTTCTCGTATCGCGTAGTAGTTGAAACTTTCTTTTTTCGCTTTTGTTTGCCAGAGAGAAAGCAACGAGAGGTTGGGGAAG...

XM_057943261.1
CGCACGTATCTATACTTACATTTCTCAATTTCCATTTTCATTTTAAAGAGACTTTTCTCTCTCCCTCTCTCTCTAAAAAAGGCTAAGCCCCTTCTCGTATCGCGTAGTAGTTGAAACTTTCTTTTTTCGCTTTTGTTTGCCAGAGAGAAAGCAACGAGAGGTTGGGGAAGAAGGCAGAGAAGCGCAAACGCAGGATTATTGTCTTCATCATCGTAAGCCGTTTTTATGGACCGGTCCTCTGGCAAAAGAGGAGCAGGCGG...

CDS

2 records

下载 CDS FASTA

LOC131015061
ATGGACCGGTCCTCTGGCAAAAGAGGAGCAGGCGGGAGTGTGACACCCAGAAAGAATTACAGTGCAACGGCTTTCAGAGAAGCAACCACTCAAGGGGATGAAAGTGCTCAGTTTTGCAACCGGATTGGATGCAGTGGAAGAATTAAGTTCGGTCAGAATGCTAGAATCGGAATCTCAGATACAAGCAAATACTCTAAGCCTTCTTTTCATTGTTCAAGTGGAAATGAAGCTACTGGGAAGATCTCTAGAAGTAATTCCAC...

Protein

2 records

下载 Protein FASTA

XP_057799243.1
MDRSSGKRGAGGSVTPRKNYSATAFREATTQGDESAQFCNRIGCSGRIKFGQNARIGISDTSKYSKPSFHCSSGNEATGKISRSNSTVTNAKRSCVDSKRKVTSQVTSDPSETESSLSTEPEAQGIVSTPSNLRGYQPEPMTKSKEVNMTEAGSSSASTSVGPRKPFRCKSELRNQSTSPASPVPSASRSSALRPFNRINGSRYGLRNLRCNSISDAVPPSCSQPESAYVRKNVINKRSSEGESSSPCRGRRNTASPNVE...

XP_057799244.1
MDRSSGKRGAGGSVTPRKNYSATAFREATTQGDESAQFCNRIGCSGRIKFGQNARIGISDTSKYSKPSFHCSSGNEATGKISRSNSTVTNAKRSCVDSKRKVTSQVTSDPSETESSLSTEPEAQGIVSTPSNLRGYQPEPMTKSKEVNMTEAGSSSASTSVGPRKPFRCKSELRNQSTSPASPVPSASRSSALRPFNRINGSRYGLRNLRCNSISDAVPPSCSQPESAYVRKNVINKRSSEGESSSPCRGRRNTASPNVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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