当前解析结果
SmilChr03G004200| 统一新 Gene ID | SmilChr03G004200 |
|---|---|
| 名称 | SmilChr03G004200 |
| 描述 | glycosyltransferase family protein 64 C3-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60630235 - 60632641 / - |
| NCBI Gene ID | LOC131015076 |
|---|---|
| GeneID | 131015076 |
| locus_tag | - |
| NCBI Name | LOC131015076 |
| 原始查询 | LOC131015076 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycosyltransferase family protein 64 C3-like |
| 产物 | glycosyltransferase family protein 64 C3-like |
| Arabidopsis | AT1G80290 (AT1G80290)Nucleotide-diphospho-sugar transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844369] identity=56.5; qcov=0.78; evalue=8.07e-108; confidence=high |
| Rice | Os06g0705000- identity=33.1; qcov=0.666; evalue=1.03e-23; confidence=low |
| GO | GO:0006486 (GO:0006486); GO:0016020 (membrane); GO:0016757 (glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF09258 (Glyco_transf_64) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015076 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057799275.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057799277.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799275.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799275.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799275.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60631410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:60631440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:60631459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:60631549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr3:60631585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B55,C15,C35,D5 |
Chr3:60631654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,C25 |
Chr3:60631755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:60631759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B26,B36,B69,C21 |
Chr3:60631813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B62,C25,C33,C41,D10 |
Chr3:60631861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr3:60631874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr3:60631980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799275.1PF09258
Glyco_transf_64 110-363 aa
XP_057799276.1PF09258
Glyco_transf_64 110-363 aa
XP_057799277.1PF09258
Glyco_transf_64 110-363 aa
XP_057799278.1PF09258
Glyco_transf_64 110-363 aa
XP_057799280.1PF09258
Glyco_transf_64 110-363 aa
XP_057799281.1PF09258
Glyco_transf_64 110-363 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799275.1 |
Pfam | PF09258 |
Glyco_transf_64 | Domain | 110 | 363 | 1.5e-70 | 238.0 | Glycosyl transferase family 64 domain |
XP_057799276.1 |
Pfam | PF09258 |
Glyco_transf_64 | Domain | 110 | 363 | 1.5e-70 | 238.0 | Glycosyl transferase family 64 domain |
XP_057799277.1 |
Pfam | PF09258 |
Glyco_transf_64 | Domain | 110 | 363 | 1.5e-70 | 238.0 | Glycosyl transferase family 64 domain |
XP_057799278.1 |
Pfam | PF09258 |
Glyco_transf_64 | Domain | 110 | 363 | 1.5e-70 | 238.0 | Glycosyl transferase family 64 domain |
XP_057799280.1 |
Pfam | PF09258 |
Glyco_transf_64 | Domain | 110 | 363 | 1.6e-70 | 238.0 | Glycosyl transferase family 64 domain |
XP_057799281.1 |
Pfam | PF09258 |
Glyco_transf_64 | Domain | 110 | 363 | 1.5e-70 | 238.0 | Glycosyl transferase family 64 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。