当前解析结果
SmilChr03G004227| 统一新 Gene ID | SmilChr03G004227 |
|---|---|
| 名称 | SmilChr03G004227 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 60807649 - 60810012 / - |
| NCBI Gene ID | LOC131015102 |
|---|---|
| GeneID | 131015102 |
| locus_tag | - |
| NCBI Name | LOC131015102 |
| 原始查询 | LOC131015102 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT5G02930 (AT5G02930)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831737] identity=29.8; qcov=0.704; evalue=1.57e-24; confidence=low |
| Rice | Os10g0128200 (OsFbox517)- identity=29.4; qcov=0.563; evalue=1.04e-12; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015102 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799336.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057799336.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057799336.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057799336.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057799336.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:60808149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr3:60808186 |
GAA |
G |
2bp_deletion | frameshift_variant | 1 | C48 |
Chr3:60808186 |
GAA |
G |
2bp_deletion | CDS_variant | 1 | C48 |
Chr3:60808204 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | C48 |
Chr3:60808204 |
G |
GT |
1bp_insertion | CDS_variant | 1 | C48 |
Chr3:60808207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr3:60808841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B132,B23 |
Chr3:60809021 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B27,D11 |
Chr3:60809070 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B135,C47 |
Chr3:60809177 |
AC |
A |
1bp_deletion | frameshift_variant | 30 | A22,A23,A4,A6,B100,B102,B112,B115,B118,B128,B13,B25,B28,B33,B43,B45,B58,B59,B69,B70,B94,B98,C22,C35,C39,C46,C49,C60,C61,C77 |
Chr3:60809186 |
GAA |
G |
2bp_deletion | frameshift_variant | 4 | B129,B133,C11,D9 |
Chr3:60809186 |
GAA |
G |
2bp_deletion | CDS_variant | 4 | B129,B133,C11,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799336.1PF00646
F-box 19-57 aa
PF12937
F-box-like 20-52 aa
PF23622
LRR_At1g61320_AtMIF1 82-246 aa
PF24758
LRR_At5g56370 99-215 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799336.1 |
Pfam | PF00646 |
F-box | Domain | 19 | 57 | 1.4e-07 | 31.8 | F-box domain |
XP_057799336.1 |
Pfam | PF12937 |
F-box-like | Domain | 20 | 52 | 7.4e-06 | 26.4 | F-box-like |
XP_057799336.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 82 | 246 | 7.4e-09 | 36.2 | At1g61320/AtMIF1, LRR domain |
XP_057799336.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 99 | 215 | 9.9e-11 | 42.4 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。