Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004241`

染色体: Chr03 坐标: 60928857-60931634 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004241`
名称	SmilChr03G004241
描述	miltiradiene synthase KSL1, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60928857 - 60931634 / `+`

ID 对照

NCBI Gene ID	`LOC131015111`
GeneID	`131015111`
locus_tag	`-`
NCBI Name	`LOC131015111`
原始查询	`LOC131015111`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	miltiradiene synthase KSL1, chloroplastic
产物	miltiradiene synthase KSL1%2C chloroplastic
Arabidopsis	`AT1G79460` (GA2) Terpenoid cyclases/Protein prenyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844284] identity=35.4; qcov=0.887; evalue=3.38e-92; confidence=medium
Rice	`Os04g0612000` (KS2) - identity=34; qcov=0.876; evalue=1.13e-101; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	smil00904 (Diterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131015111

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057799345.1`
2	Cytosol	细胞质基质	0.20000	`XP_057799345.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057799345.1`
4	Nucleus	细胞核	0.00000	`XP_057799345.1`
5	Chromosome	染色体	0.00000	`XP_057799345.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60928913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr3:60928920`	`GAA`	`G`	2bp_deletion	frameshift_variant	5	A24,C42,C46,C5,C58
`Chr3:60928920`	`GAA`	`G`	2bp_deletion	CDS_variant	5	A24,C42,C46,C5,C58
`Chr3:60928931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,D10
`Chr3:60929106`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr3:60929113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,C42,C53,C58
`Chr3:60929134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,C42,C53,C58
`Chr3:60929239`	`C`	`T`	EMS_canonical_SNV	stop_gained	8	A15,A20,B118,B126,B139,B30,B74,C16
`Chr3:60929366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr3:60929961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,A16,B10,B29,D3
`Chr3:60929964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B48,B93,C56
`Chr3:60930128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B129,B22,B99,C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799345.1

595 aa

298

595

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 53-218 aa PF03936 Terpene_synth_C 287-525 aa PF19086 Terpene_syn_C_2 327-524 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799345.1`	Pfam	`PF01397`	Terpene_synth	Repeat	53	218	2.8e-32	112.7	Terpene synthase, N-terminal domain
`XP_057799345.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	287	525	2.3e-42	145.7	Terpene synthase family, metal binding domain
`XP_057799345.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	327	524	5.9e-29	102.0	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943362.1
ATGTCGCTCGCCTTCAACCCGGCAGCCACCGCTTTCTCCGGCAACGGGGCTCGGAGCAGGAGAGAAAATTTTCCGGTGAAGCATGTTACAGTCCGAGGATTTCCGATGATCACCAACAAGTCATCTTTCGCCGTGAAATGCAACCTTACTACAACAGATTTGATGGGGAAGATAGCAGAGAAGTTCAAGGGGGAAGACAGTAACTTTCCGGCAGCTGCGGCTGTTCAGCCTGCGGCGGATATACCCTCTAATCTCTGTAT...

CDS

1 records

下载 CDS FASTA

LOC131015111
ATGTCGCTCGCCTTCAACCCGGCAGCCACCGCTTTCTCCGGCAACGGGGCTCGGAGCAGGAGAGAAAATTTTCCGGTGAAGCATGTTACAGTCCGAGGATTTCCGATGATCACCAACAAGTCATCTTTCGCCGTGAAATGCAACCTTACTACAACAGATTTGATGGGGAAGATAGCAGAGAAGTTCAAGGGGGAAGACAGTAACTTTCCGGCAGCTGCGGCTGTTCAGCCTGCGGCGGATATACCCTCTAATCTCTGTAT...

Protein

1 records

下载 Protein FASTA

XP_057799345.1
MSLAFNPAATAFSGNGARSRRENFPVKHVTVRGFPMITNKSSFAVKCNLTTTDLMGKIAEKFKGEDSNFPAAAAVQPAADIPSNLCIIDTLQRLGVDRYFRPEIDTILEGTYRLWQRKERAIFSDTAIHAMAFRLLRVKGYEVSSEELAPYADQEHVDLQTIEVATVIELYRAAQERTGEEESSLKKLHAWTTTFLKQKLLTNSIPDKKLHKLVEYYLKNYHGILDRMGVRQNLDLYDISYYRTAKAANRFSNLRSEDFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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