Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004245`

染色体: Chr03 坐标: 60957313-60960053 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004245`
名称	SmilChr03G004245
描述	plant-specific TFIIB-related protein PTF2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	60957313 - 60960053 / `-`

ID 对照

NCBI Gene ID	`LOC131015121`
GeneID	`131015121`
locus_tag	`-`
NCBI Name	`LOC131015121`
原始查询	`LOC131015121`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plant-specific TFIIB-related protein PTF2
产物	plant-specific TFIIB-related protein PTF2
Arabidopsis	`AT4G35540` (AT4G35540) POLLEN-EXPRESSED TRANSCRIPTION FACTOR 2 [Source:NCBI gene (formerly Entrezgene);Acc:829706] identity=44.9; qcov=1.02; evalue=1.74e-136; confidence=medium
Rice	`Os08g0532500` (P0702E04.20-1) - identity=32.4; qcov=1.12; evalue=1.71e-77; confidence=low
GO	GO:0000126 (transcription factor TFIIIB complex); GO:0000995 (RNA polymerase III general transcription initiation factor activity); GO:0001006 (RNA polymerase III type 3 promoter sequence-specific DNA binding); GO:0005634 (nucleus); GO:0006352 (DNA-templated transcription initiation); GO:0006383 (transcription by RNA polymerase III); GO:0070897 (transcription preinitiation complex assembly); GO:0097550 (transcription preinitiation complex)
KEGG	-
Pfam	PF21886 (BRF2-like_C_cyclin_rpt)
InterPro	-
eggNOG	-
NR	GeneID:131015121

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057799357.1`
2	Chromosome	染色体	0.00000	`XP_057799357.1`
3	Centromere	着丝粒	0.00000	`XP_057799357.1`
4	Chromatin	染色质	0.00000	`XP_057799357.1`
5	Telomere	端粒	0.00000	`XP_057799357.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:60957409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:60957411`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B66
`Chr3:60957411`	`CT`	`C`	1bp_deletion	CDS_variant	1	B66
`Chr3:60957445`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr3:60957447`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:60957545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr3:60957693`	`GA`	`G`	1bp_deletion	frameshift_variant	8	A19,A8,B104,B15,B45,B48,B84,C24
`Chr3:60957712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,A5,A9,B98,D7
`Chr3:60957731`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B27
`Chr3:60957731`	`TC`	`T`	1bp_deletion	CDS_variant	1	B27
`Chr3:60957792`	`G`	`A`	EMS_canonical_SNV	stop_gained	163	A1,A13,A18,A19,A2,A20,A21,A22,A23,A3,A4,A6,A8,A9,B1,B10,B100,B102,B104,B106,B107,B11,B110,B112,B115,B118,B119,B12,B120,B121,B122,B124,B127,B128,B130,B136,B138,B139,B14,B140,B15,B16,B17,B18,B19,B20,B22,B23,B24,B25,B26,B27,B31,B33,B34,B36,B37,B4,B40,B42,B43,B44,B45,B47,B48,B5,B52,B53,B54,B57,B58,B6,B60,B61,B63,B65,B67,B68,B69,B7,B70,B71,B73,B75,B77,B78,B8,B81,B82,B84,B85,B86,B87,B88,B89,B90,B91,B92,B94,B95,B97,B98,B99,C10,C12,C14,C15,C17,C2,C20,C21,C22,C24,C25,C26,C28,C29,C3,C30,C31,C32,C35,C36,C38,C4,C40,C41,C42,C44,C45,C46,C48,C5,C50,C51,C53,C54,C57,C6,C60,C62,C63,C64,C65,C66,C68,C70,C73,C75,C76,C78,C8,C82,C85,C86,C87,D11,D2,D3,D4,D6,D7,D8
`Chr3:60957802`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B85,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799357.1

527 aa

264

527

BRF2-like_C_cyclin_rpt

PF21886 BRF2-like_C_cyclin_rpt 188-276 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799357.1`	Pfam	`PF21886`	BRF2-like_C_cyclin_rpt	Domain	188	276	9.9e-07	29.6	BRF2-like, C-terminal cyclin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943374.1
TCGTCTTTCGTAAAATCTCTATCCGCCGCTGCACTCCTCTACAAACCCATTTTCTTTCGCAATTACTTTTGCACTTGCTCCCTTATTTATCCTGGGAAACACCAAAATTGCTTCAATTTGACCGCTATTTTGGGGGTTTCCAATTGGAATTGGACTGACACACAGAATCAATGCATTGATATGAAGTCTGAAGATTATTATTCCGCCTCCAATTTTTTCTGAGCAGATTTTGATTGTTTCCTTGCTCCGAATTCAACGAG...

CDS

1 records

下载 CDS FASTA

LOC131015121
ATGTCTCGCGCCTGCGAGCACTGCGGGAGGAGGACGCTAGTCCCCGACGATGAGTCAGGTAATATGGTCTGCGCGTCGTGCGGAACAATACAAGAATTCGACAATTTCCAGGCGCATATCGGCGGCATTACCGGCGTCACCGGAACCTACGTCCGCCTCGGCACCGCCGGCACCGGCACCTTCCACAATTACAAGGAAACTAAAATCTATCATGCGCAAAACGTGATTAATGATTTTATGTTCAAGCTAGGGTTTTCAGT...

Protein

1 records

下载 Protein FASTA

XP_057799357.1
MSRACEHCGRRTLVPDDESGNMVCASCGTIQEFDNFQAHIGGITGVTGTYVRLGTAGTGTFHNYKETKIYHAQNVINDFMFKLGFSVPKSEEVRLLIEKVTDGEYGQGEWFPVLVGACSYIVMRKDQKMLPIVEVADTVGCDVYELGRMIGRVVDFVDMKLPEFDIVNAFERAMKTIPSFGGVQEDLVERMLQQGVFLVQCLIKWFVTTGRRPMPVVAAVLVFVAQLNQVDNVKIEDVAMELHVVTSTCRRRYKELLERL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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