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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004249

染色体: Chr03 坐标: 60971517-60975668 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004249
名称SmilChr03G004249
描述pentatricopeptide repeat-containing protein At4g31850, chloroplastic
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向60971517 - 60975668 / +

ID 对照

NCBI Gene IDLOC131015125
GeneID131015125
locus_tag-
NCBI NameLOC131015125
原始查询LOC131015125

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At4g31850, chloroplastic
产物pentatricopeptide repeat-containing protein At4g31850%2C chloroplastic
ArabidopsisAT4G31850 (PGR3)
proton gradient regulation 3 [Source:NCBI gene (formerly Entrezgene);Acc:829314]
identity=60.9; qcov=0.969; evalue=0; confidence=high
RiceOs10g0421800
-
identity=52.6; qcov=0.925; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131015125

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057799363.1
2 Chloroplast 叶绿体 0.20000 XP_057799363.1
3 Nucleus 细胞核 0.00000 XP_057799363.1
4 Chromosome 染色体 0.00000 XP_057799363.1
5 Centromere 着丝粒 0.00000 XP_057799363.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:60971927 G A EMS_canonical_SNV CDS_variant 1 B136
Chr3:60971949 C T EMS_canonical_SNV CDS_variant 1 A5
Chr3:60972093 C T EMS_canonical_SNV CDS_variant 1 C72
Chr3:60972182 G A EMS_canonical_SNV CDS_variant 1 B100
Chr3:60972405 G A EMS_canonical_SNV CDS_variant 1 A5
Chr3:60972492 G A EMS_canonical_SNV CDS_variant 2 B106,B140
Chr3:60972932 C T EMS_canonical_SNV CDS_variant 1 A5
Chr3:60973036 G A EMS_canonical_SNV CDS_variant 1 B121
Chr3:60973305 G A EMS_canonical_SNV CDS_variant 1 B87
Chr3:60973403 G A EMS_canonical_SNV CDS_variant 1 C72
Chr3:60973433 C T EMS_canonical_SNV CDS_variant 1 A5
Chr3:60973682 G A EMS_canonical_SNV CDS_variant 5 B136,B26,B64,B97,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799363.1
1107 aa
N
1
554
1107
PPR_3
PPR_long
PPR
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR
PPR_2
TPR_24
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_3
PPR_2
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13812 PPR_3 177-235 aa PF17177 PPR_long 177-329 aa PF01535 PPR 189-217 aa PF01535 PPR 225-254 aa PF13041 PPR_2 225-269 aa PF13812 PPR_3 245-302 aa PF12854 PPR_1 253-285 aa PF01535 PPR 259-289 aa PF13041 PPR_2 265-305 aa PF12854 PPR_1 288-320 aa PF13812 PPR_3 288-340 aa PF13041 PPR_2 292-338 aa PF01535 PPR 294-321 aa PF01535 PPR 329-358 aa PF13041 PPR_2 329-375 aa PF23276 TPR_24 339-458 aa PF17177 PPR_long 344-451 aa PF13812 PPR_3 354-405 aa PF12854 PPR_1 357-390 aa PF13041 PPR_2 362-409 aa PF01535 PPR 364-394 aa PF12854 PPR_1 393-425 aa PF13041 PPR_2 396-442 aa PF01535 PPR 400-428 aa PF23276 TPR_24 418-526 aa PF13812 PPR_3 420-473 aa PF12854 PPR_1 427-460 aa PF01535 PPR 434-464 aa PF13812 PPR_3 462-513 aa PF13041 PPR_2 466-513 aa PF23276 TPR_24 477-561 aa PF12854 PPR_1 498-529 aa PF13041 PPR_2 501-538 aa PF01535 PPR 504-534 aa PF13812 PPR_3 525-580 aa PF13041 PPR_2 537-584 aa PF01535 PPR 541-567 aa PF12854 PPR_1 569-600 aa PF13041 PPR_2 571-620 aa PF01535 PPR 574-604 aa PF13812 PPR_3 577-617 aa PF13812 PPR_3 594-650 aa PF12854 PPR_1 603-634 aa PF13041 PPR_2 606-655 aa PF01535 PPR 609-639 aa PF12854 PPR_1 638-670 aa PF13041 PPR_2 641-688 aa PF01535 PPR 644-672 aa PF13041 PPR_2 782-830 aa PF13812 PPR_3 808-864 aa PF13041 PPR_2 818-866 aa PF01535 PPR 821-850 aa PF12854 PPR_1 848-877 aa PF13041 PPR_2 852-901 aa PF01535 PPR 856-884 aa PF13812 PPR_3 883-936 aa PF01535 PPR 891-919 aa PF17177 PPR_long 907-993 aa PF12854 PPR_1 920-951 aa PF13041 PPR_2 922-970 aa PF01535 PPR 926-955 aa PF13812 PPR_3 946-1005 aa PF12854 PPR_1 954-985 aa PF01535 PPR 961-989 aa PF12854 PPR_1 989-1021 aa PF13041 PPR_2 992-1036 aa PF01535 PPR 996-1024 aa PF01535 PPR 1030-1059 aa PF13812 PPR_3 1051-1103 aa PF12854 PPR_1 1059-1090 aa PF13041 PPR_2 1062-1102 aa PF01535 PPR 1065-1095 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 177 235 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF17177 PPR_long Repeat 177 329 9.7e-62 208.8 Pentacotripeptide-repeat region of PRORP
XP_057799363.1 Pfam PF01535 PPR Repeat 189 217 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF01535 PPR Repeat 225 254 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 225 269 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 245 302 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 253 285 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF01535 PPR Repeat 259 289 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 265 305 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 288 320 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 288 340 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 292 338 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 294 321 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF01535 PPR Repeat 329 358 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 329 375 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF23276 TPR_24 Repeat 339 458 5e-51 172.8 Pentatricopeptide repeat-containing protein
XP_057799363.1 Pfam PF17177 PPR_long Repeat 344 451 9.7e-62 208.8 Pentacotripeptide-repeat region of PRORP
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 354 405 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 357 390 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 362 409 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 364 394 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 393 425 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 396 442 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 400 428 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF23276 TPR_24 Repeat 418 526 5e-51 172.8 Pentatricopeptide repeat-containing protein
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 420 473 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 427 460 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF01535 PPR Repeat 434 464 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 462 513 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 466 513 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF23276 TPR_24 Repeat 477 561 5e-51 172.8 Pentatricopeptide repeat-containing protein
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 498 529 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 501 538 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 504 534 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 525 580 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 537 584 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 541 567 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 569 600 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 571 620 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 574 604 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 577 617 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 594 650 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 603 634 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 606 655 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 609 639 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 638 670 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 641 688 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 644 672 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 782 830 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 808 864 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 818 866 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 821 850 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 848 877 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 852 901 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 856 884 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 883 936 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF01535 PPR Repeat 891 919 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF17177 PPR_long Repeat 907 993 9.7e-62 208.8 Pentacotripeptide-repeat region of PRORP
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 920 951 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 922 970 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 926 955 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 946 1005 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 954 985 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF01535 PPR Repeat 961 989 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 989 1021 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 992 1036 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 996 1024 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF01535 PPR Repeat 1030 1059 5e-150 478.4 PPR repeat
XP_057799363.1 Pfam PF13812 PPR_3 Repeat 1051 1103 2.4e-121 396.6 Pentatricopeptide repeat domain
XP_057799363.1 Pfam PF12854 PPR_1 Repeat 1059 1090 7.1e-177 573.5 PPR repeat
XP_057799363.1 Pfam PF13041 PPR_2 Repeat 1062 1102 4.2e-222 719.0 PPR repeat family
XP_057799363.1 Pfam PF01535 PPR Repeat 1065 1095 5e-150 478.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057943380.1
AGCGGTAGCGACTTTAAGTTAAAACTAGGAAGAAGTGGAGAGATATTGAGAGCAGCGCGACGCCATAGCCACAAGCAATTCTATCTATATTTTGGCAGCTACATTTTCATACAGAACTGATGTCGTCTTCCCTTTCTTCCTCGCATGCTTGTGAAAATATCTCAAATTTGTGACTTCATGCATGGCTGCGGTGATGCTGAGTTCTTCTAGCTTGTGTTGCTGTAACTGTAGCCATGTATCTCTGACCAACGATAACAGCA...

CDS

1 records

下载 CDS FASTA
LOC131015125
ATGGCTGCGGTGATGCTGAGTTCTTCTAGCTTGTGTTGCTGTAACTGTAGCCATGTATCTCTGACCAACGATAACAGCAGACCATGCCTGTCCAGTTATAGTGGTGCGACGGCGAACAGAAGAAAGATTAATTCTTTTGGGGTTTTGAGATATGGGTCAGTGCTATATTGGAAGAAAATCAAGAAAAAGAATGCTAGCTTTTGTGGGCATGTGATGGATAATGGAAATGAAGCTTCGATGAAAGACATGTCCTCTGAGGA...

Protein

1 records

下载 Protein FASTA
XP_057799363.1
MAAVMLSSSSLCCCNCSHVSLTNDNSRPCLSSYSGATANRRKINSFGVLRYGSVLYWKKIKKKNASFCGHVMDNGNEASMKDMSSEEIMARLKSIPDLDLAFDFFNSIAGMPHVMHTTETCNYMLGQLRVHERIECMVVVFDMMQKQIIYRSLDTYLIIFRSLGVRGGIRHAPFALERMRECGFKLNAYSYNGLIHLLIQAGFSREALMVYSRMISEELKPSLKTYSALMVASGKQRDTETVMGLLEDMEKLGLRPNVYT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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