当前解析结果
SmilChr03G004259| 统一新 Gene ID | SmilChr03G004259 |
|---|---|
| 名称 | SmilChr03G004259 |
| 描述 | protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61090711 - 61092350 / - |
| NCBI Gene ID | LOC131015137 |
|---|---|
| GeneID | 131015137 |
| locus_tag | - |
| NCBI Name | LOC131015137 |
| 原始查询 | LOC131015137 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like |
| 产物 | protein POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION-like |
| Arabidopsis | AT4G31805 (AT4G31805)WRKY family transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:829309] identity=28.4; qcov=1.02; evalue=3.67e-24; confidence=low |
| Rice | Os06g0648500- identity=31.4; qcov=0.803; evalue=1.71e-17; confidence=low |
| GO | GO:0008356 (asymmetric cell division) |
| KEGG | - |
| Pfam | PF30915 (POLAR) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015137 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.40000 | XP_057799376.1 |
| 2 | Nucleus membrane | 核膜 | 0.20000 | XP_057799376.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057799376.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057799376.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799376.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61091016 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C38,C76 |
Chr3:61091027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C54,D9 |
Chr3:61091028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:61091036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B104,B119,B59,C3 |
Chr3:61091060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,B34 |
Chr3:61091458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C56 |
Chr3:61091738 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B8 |
Chr3:61091738 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B8 |
Chr3:61091779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr3:61091798 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B136,C23 |
Chr3:61091817 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B76 |
Chr3:61091817 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799376.1PF30915
POLAR 21-307 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799376.1 |
Pfam | PF30915 |
POLAR | Family | 21 | 307 | 1.2e-43 | 150.0 | POLAR asymmetric cell division scaffold |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。