当前解析结果
SmilChr03G004271| 统一新 Gene ID | SmilChr03G004271 |
|---|---|
| 名称 | SmilChr03G004271 |
| 描述 | uncharacterized SmilChr03G004271 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61172726 - 61177418 / - |
| NCBI Gene ID | LOC131015148 |
|---|---|
| GeneID | 131015148 |
| locus_tag | - |
| NCBI Name | LOC131015148 |
| 原始查询 | LOC131015148 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sterile alpha motif (SAM) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819178]; symbol=AT2G45700; hit=AT2G45700; species=arabidopsis; confidence=high |
| 产物 | sterile alpha motif (SAM) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819178]; symbol=AT2G45700; hit=AT2G45700; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G45700 (AT2G45700)sterile alpha motif (SAM) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:819178] identity=50.3; qcov=1.06; evalue=0; confidence=high |
| Rice | Os09g0439000- identity=50.3; qcov=0.831; evalue=0; confidence=high |
| GO | GO:0003684 (damaged DNA binding); GO:0005515 (protein binding); GO:0006303 (double-strand break repair via nonhomologous end joining); GO:0031848 (protection from non-homologous end joining at telomere); GO:0035312 (5'-3' DNA exonuclease activity); GO:0036297 (interstrand cross-link repair) |
| KEGG | - |
| Pfam | PF00536 (SAM_1); PF07522 (DRMBL); PF07647 (SAM_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015148 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057799391.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057799391.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057799391.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057799391.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057799391.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61172948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr3:61173031 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C18 |
Chr3:61173197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:61173239 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:61173377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B123,B140 |
Chr3:61173475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A6,B101,B126,B33 |
Chr3:61173484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:61173677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C18 |
Chr3:61173920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr3:61174077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:61174110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:61174761 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | C13,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799391.1PF00536
SAM_1 236-295 aa
PF07647
SAM_2 238-294 aa
PF07522
DRMBL 590-692 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799391.1 |
Pfam | PF00536 |
SAM_1 | Domain | 236 | 295 | 1.6e-19 | 70.7 | SAM domain (Sterile alpha motif) |
XP_057799391.1 |
Pfam | PF07647 |
SAM_2 | Domain | 238 | 294 | 1.2e-13 | 51.7 | SAM domain (Sterile alpha motif) |
XP_057799391.1 |
Pfam | PF07522 |
DRMBL | Domain | 590 | 692 | 1.4e-27 | 96.7 | DNA repair metallo-beta-lactamase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。