当前解析结果
SmilChr03G004287| 统一新 Gene ID | SmilChr03G004287 |
|---|---|
| 名称 | SmilChr03G004287 |
| 描述 | cytochrome P450 71D95-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61278212 - 61280008 / - |
| NCBI Gene ID | LOC131015165 |
|---|---|
| GeneID | 131015165 |
| locus_tag | - |
| NCBI Name | LOC131015165 |
| 原始查询 | LOC131015165 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 71D95-like |
| 产物 | cytochrome P450 71D95-like |
| Arabidopsis | AT3G26300 (CYP71B34)cytochrome P450, family 71, subfamily B, polypeptide 34 [Source:NCBI gene (formerly Entrezgene);Acc:822234] identity=41.5; qcov=0.998; evalue=9.76e-136; confidence=medium |
| Rice | Os03g0593600 (CYP71W1)- identity=47.1; qcov=0.964; evalue=9.34e-150; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015165 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057799419.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057799419.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799419.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799419.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799419.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61278580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:61278602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:61278637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B69,C31,C36 |
Chr3:61278894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr3:61278916 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B40,C65,C71 |
Chr3:61279061 |
TTG |
T |
2bp_deletion | frameshift_variant | 29 | A1,A16,A2,A25,A3,B10,B102,B127,B132,B134,B135,B136,B29,B46,B47,B60,B68,B77,C16,C18,C23,C28,C42,C50,C83,C85,D11,D7,D9 |
Chr3:61279130 |
TG |
T |
1bp_deletion | frameshift_variant | 35 | A10,A21,A5,A7,B109,B125,B133,B139,B17,B26,B32,B44,B49,B54,B62,B69,B78,B79,B83,B90,B92,B97,C1,C21,C25,C31,C36,C41,C45,C48,C59,C73,D3,D6,D9 |
Chr3:61279151 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | D11 |
Chr3:61279151 |
AT |
A |
1bp_deletion | CDS_variant | 1 | D11 |
Chr3:61279159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr3:61279198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:61279312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799419.1PF00067
p450 40-473 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799419.1 |
Pfam | PF00067 |
p450 | Domain | 40 | 473 | 3.4e-100 | 336.7 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。