Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004293`

染色体: Chr03 坐标: 61342152-61346680 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004293`
名称	SmilChr03G004293
描述	probable boron transporter 7
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61342152 - 61346680 / `-`

ID 对照

NCBI Gene ID	`LOC131015174`
GeneID	`131015174`
locus_tag	`-`
NCBI Name	`LOC131015174`
原始查询	`LOC131015174`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable boron transporter 7
产物	probable boron transporter 7
Arabidopsis	`AT1G15460` (BOR4) HCO3- transporter family [Source:NCBI gene (formerly Entrezgene);Acc:838116] identity=65.5; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0175700` (BOR2) - identity=67.1; qcov=0.995; evalue=0; confidence=high
GO	GO:0005452 (solute:inorganic anion antiporter activity); GO:0005886 (plasma membrane); GO:0006820 (monoatomic anion transport); GO:0050801 (monoatomic ion homeostasis); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00955 (HCO3_cotransp)
InterPro	-
eggNOG	-
NR	GeneID:131015174

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799426.1`
2	Nucleus	细胞核	0.00000	`XP_057799426.1`
3	Chromosome	染色体	0.00000	`XP_057799426.1`
4	Centromere	着丝粒	0.00000	`XP_057799426.1`
5	Chromatin	染色质	0.00000	`XP_057799426.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61342520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:61342521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:61342530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C10,C18,C53
`Chr3:61342683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr3:61343042`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:61343417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr3:61343582`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B64,C4,D7
`Chr3:61343599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr3:61343663`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:61343759`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,B84
`Chr3:61343766`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B107,C10,C18,C53
`Chr3:61344180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799426.1

665 aa

N

1

332

665

HCO3_cotransp

HCO3_cotransp

HCO3_cotransp

C

PF00955 HCO3_cotransp 7-178 aa PF00955 HCO3_cotransp 198-372 aa PF00955 HCO3_cotransp 450-592 aa

XP_057799427.1

665 aa

N

1

332

665

HCO3_cotransp

HCO3_cotransp

HCO3_cotransp

C

PF00955 HCO3_cotransp 7-178 aa PF00955 HCO3_cotransp 198-372 aa PF00955 HCO3_cotransp 450-592 aa

XP_057799428.1

665 aa

N

1

332

665

HCO3_cotransp

HCO3_cotransp

HCO3_cotransp

C

PF00955 HCO3_cotransp 7-178 aa PF00955 HCO3_cotransp 198-372 aa PF00955 HCO3_cotransp 450-592 aa

XP_057799429.1

665 aa

N

1

332

665

HCO3_cotransp

HCO3_cotransp

HCO3_cotransp

C

PF00955 HCO3_cotransp 7-178 aa PF00955 HCO3_cotransp 198-372 aa PF00955 HCO3_cotransp 450-592 aa

XP_057799430.1

665 aa

N

1

332

665

HCO3_cotransp

HCO3_cotransp

HCO3_cotransp

C

PF00955 HCO3_cotransp 7-178 aa PF00955 HCO3_cotransp 198-372 aa PF00955 HCO3_cotransp 450-592 aa

XP_057799431.1

665 aa

N

1

332

665

HCO3_cotransp

HCO3_cotransp

HCO3_cotransp

C

PF00955 HCO3_cotransp 7-178 aa PF00955 HCO3_cotransp 198-372 aa PF00955 HCO3_cotransp 450-592 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799426.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	7	178	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799426.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	198	372	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799426.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	450	592	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799427.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	7	178	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799427.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	198	372	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799427.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	450	592	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799428.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	7	178	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799428.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	198	372	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799428.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	450	592	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799429.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	7	178	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799429.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	198	372	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799429.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	450	592	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799430.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	7	178	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799430.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	198	372	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799430.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	450	592	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799431.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	7	178	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799431.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	198	372	8.2e-99	332.5	HCO3- transporter integral membrane domain
`XP_057799431.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	450	592	8.2e-99	332.5	HCO3- transporter integral membrane domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057943445.1
CCCTCCCAATGTCCGATGTTTTTATATTTTCGAATTCACAACATTCGCTGCTCGACATCCATTCCTCCCTCCCTCCCTCACCACCCTCTCTCTCTCTCTCTCTCATGAACTGAACAAGAGTGGAAATAGGAAGCGTAACAAAAACGAGTAAGAGAGACACCATGGATGGCCTCAAGACTCCGTTCAAGGGAGTCGAGAAGGATTTCAAAGGGCGGTTGGCATGCTACAAGAAGGACTGGCTCGATTCCTGTGGCTCGGGC...

XM_057943447.1
ATTCGCTGCTCGACATCCATTCCTCCCTCCCTCCCTCACCACCCTCTCTCTCTCTCTCTCTCATGAACTGAACAAGAGTGGAAATAGGAAGCGTAACAAAAACGAGTAAGAGAGCAGACACCATGGATGGCCTCAAGACTCCGTTCAAGGGAGTCGAGAAGGATTTCAAAGGGCGGTTGGCATGCTACAAGAAGGACTGGCTCGATTCCTGTGGCTCGGGCGCAAGGATTCTTGCTCCAACGGCCTATATTTTCTTCGCT...

CDS

6 records

下载 CDS FASTA

LOC131015174
ATGGATGGCCTCAAGACTCCGTTCAAGGGAGTCGAGAAGGATTTCAAAGGGCGGTTGGCATGCTACAAGAAGGACTGGCTCGATTCCTGTGGCTCGGGCGCAAGGATTCTTGCTCCAACGGCCTATATTTTCTTCGCTTCTGCTCTCCCTGTGATTGCCTTTGGAGAGCAACTGAGTCGAGAAACAGAGGGAAGCTTGAGCACCCCCGAAACTCTTGCTTCTACAGCTATCTGTGGAGTCATTCATGCGATTTTCGGTGG...

LOC131015174
ATGGATGGCCTCAAGACTCCGTTCAAGGGAGTCGAGAAGGATTTCAAAGGGCGGTTGGCATGCTACAAGAAGGACTGGCTCGATTCCTGTGGCTCGGGCGCAAGGATTCTTGCTCCAACGGCCTATATTTTCTTCGCTTCTGCTCTCCCTGTGATTGCCTTTGGAGAGCAACTGAGTCGAGAAACAGAGGGAAGCTTGAGCACCCCCGAAACTCTTGCTTCTACAGCTATCTGTGGAGTCATTCATGCGATTTTCGGTGG...

Protein

6 records

下载 Protein FASTA

XP_057799426.1
MDGLKTPFKGVEKDFKGRLACYKKDWLDSCGSGARILAPTAYIFFASALPVIAFGEQLSRETEGSLSTPETLASTAICGVIHAIFGGQPLLILGVAEPTIIMYSYLYSFAKKTVGTQLYLAWAGWVCVWTALMLFLLAIFNACTIIRRFTRVAGELFGMLITVLFLQEAIKGVVSEFSIPEGENASEEKFQFQWLYTNGLLAIIFSFGVLITSLKSTQARSWRYGSGMFRSLVADYGVPLAVIVWTALSYSIPRNIPSGV...

XP_057799427.1
MDGLKTPFKGVEKDFKGRLACYKKDWLDSCGSGARILAPTAYIFFASALPVIAFGEQLSRETEGSLSTPETLASTAICGVIHAIFGGQPLLILGVAEPTIIMYSYLYSFAKKTVGTQLYLAWAGWVCVWTALMLFLLAIFNACTIIRRFTRVAGELFGMLITVLFLQEAIKGVVSEFSIPEGENASEEKFQFQWLYTNGLLAIIFSFGVLITSLKSTQARSWRYGSGMFRSLVADYGVPLAVIVWTALSYSIPRNIPSGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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