当前解析结果
SmilChr03G004306| 统一新 Gene ID | SmilChr03G004306 |
|---|---|
| 名称 | SmilChr03G004306 |
| 描述 | pleiotropic drug resistance protein 1-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61412159 - 61418590 / + |
| NCBI Gene ID | LOC131015188 |
|---|---|
| GeneID | 131015188 |
| locus_tag | - |
| NCBI Name | LOC131015188 |
| 原始查询 | LOC131015188 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pleiotropic drug resistance protein 1-like |
| 产物 | pleiotropic drug resistance protein 1-like |
| Arabidopsis | AT1G15520 (ABCG40)pleiotropic drug resistance 12 [Source:NCBI gene (formerly Entrezgene);Acc:838122] identity=68.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0609300 (OsPDR9)- identity=68.6; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF14510 (ABC_trans_N); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015188 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799443.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057799443.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057799443.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057799443.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057799443.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61412571 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr3:61412635 |
TG |
T |
1bp_deletion | frameshift_variant | 10 | B105,B115,B118,B138,B20,B85,B98,C39,C51,C82 |
Chr3:61412943 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr3:61413146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr3:61413355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,C44,D11,D7 |
Chr3:61413372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B125,B34,C18,C73 |
Chr3:61413929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B17,B34,B65,C62,D1 |
Chr3:61413930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B135,B82 |
Chr3:61413947 |
C |
CA |
1bp_insertion | frameshift_variant | 3 | A18,B17,B51 |
Chr3:61413947 |
C |
CA |
1bp_insertion | CDS_variant | 3 | A18,B17,B51 |
Chr3:61414297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr3:61414303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C10,C18,C53,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057799443.1PF14510
ABC_trans_N 95-142 aa
PF00005
ABC_tran 167-348 aa
PF19055
ABC2_membrane_7 382-433 aa
PF01061
ABC2_membrane 503-715 aa
PF08370
PDR_assoc 720-783 aa
PF00005
ABC_tran 846-998 aa
PF01061
ABC2_membrane 1143-1357 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799443.1 |
Pfam | PF14510 |
ABC_trans_N | Domain | 95 | 142 | 4e-06 | 27.8 | ABC-transporter N-terminal |
XP_057799443.1 |
Pfam | PF00005 |
ABC_tran | Domain | 167 | 348 | 4.2e-41 | 141.5 | ABC transporter |
XP_057799443.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 382 | 433 | 7e-14 | 52.2 | ABC-2 type transporter |
XP_057799443.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 503 | 715 | 2e-108 | 361.5 | ABC-2 type transporter |
XP_057799443.1 |
Pfam | PF08370 |
PDR_assoc | Family | 720 | 783 | 9.2e-27 | 93.3 | Plant PDR ABC transporter associated |
XP_057799443.1 |
Pfam | PF00005 |
ABC_tran | Domain | 846 | 998 | 4.2e-41 | 141.5 | ABC transporter |
XP_057799443.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1143 | 1357 | 2e-108 | 361.5 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。