当前解析结果
SmilChr03G004309| 统一新 Gene ID | SmilChr03G004309 |
|---|---|
| 名称 | SmilChr03G004309 |
| 描述 | probable serine/threonine-protein kinase PBL10 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 61430844 - 61433322 / + |
| NCBI Gene ID | LOC131015191 |
|---|---|
| GeneID | 131015191 |
| locus_tag | - |
| NCBI Name | LOC131015191 |
| 原始查询 | LOC131015191 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable serine/threonine-protein kinase PBL10 |
| 产物 | probable serine/threonine-protein kinase PBL10 |
| Arabidopsis | AT2G28930 (PK1B)protein kinase 1B [Source:NCBI gene (formerly Entrezgene);Acc:817442] identity=49.8; qcov=1.01; evalue=1.7e-103; confidence=high |
| Rice | Os05g0110900 (OsRLCK176)- identity=48.8; qcov=1.01; evalue=3.78e-102; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015191 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799446.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057799446.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057799446.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057799446.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057799446.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:61431325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C28,C36 |
Chr3:61431435 |
AGG |
A |
2bp_deletion | frameshift_variant | 6 | A21,A24,B115,B70,B91,C61 |
Chr3:61431439 |
GC |
G |
1bp_deletion | frameshift_variant | 6 | A21,A24,B115,B70,B91,C61 |
Chr3:61432327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A24,B115,B70,B91,C61 |
Chr3:61432542 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C14 |
Chr3:61432542 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C14 |
Chr3:61432946 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,B79 |
Chr3:61432947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B66 |
Chr3:61432957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,A25,C72 |
Chr3:61432993 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr3:61433035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799446.1PF00069
Pkinase 18-294 aa
PF07714
PK_Tyr_Ser-Thr 18-296 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799446.1 |
Pfam | PF00069 |
Pkinase | Domain | 18 | 294 | 3.6e-31 | 109.3 | Protein kinase domain |
XP_057799446.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 18 | 296 | 1.7e-36 | 126.5 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。