Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004310`

染色体: Chr03 坐标: 61435822-61440148 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004310`
名称	SmilChr03G004310
描述	probable serine/threonine-protein kinase PBL18
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61435822 - 61440148 / `+`

ID 对照

NCBI Gene ID	`LOC131015192`
GeneID	`131015192`
locus_tag	`-`
NCBI Name	`LOC131015192`
原始查询	`LOC131015192`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine-protein kinase PBL18
产物	probable serine/threonine-protein kinase PBL18
Arabidopsis	`AT1G69790` (AT1G69790) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843315] identity=52; qcov=1.02; evalue=8.42e-104; confidence=high
Rice	`Os10g0405100` (OsRLCK299) - identity=51; qcov=1.02; evalue=7.21e-104; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131015192

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057799447.1`
2	Cytosol	细胞质基质	0.40000	`XP_057799447.1`
3	Nucleus	细胞核	0.00000	`XP_057799447.1`
4	Chromosome	染色体	0.00000	`XP_057799447.1`
5	Centromere	着丝粒	0.00000	`XP_057799447.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61437714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:61437847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr3:61439371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr3:61439386`	`T`	`TTC`	2bp_insertion	frameshift_variant	1	D11
`Chr3:61439386`	`T`	`TTC`	2bp_insertion	CDS_variant	1	D11
`Chr3:61439390`	`TAC`	`T`	2bp_deletion	frameshift_variant	1	D11
`Chr3:61439390`	`TAC`	`T`	2bp_deletion	CDS_variant	1	D11
`Chr3:61439398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B112,B115,B37,B49,C9
`Chr3:61439825`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,B79
`Chr3:61439836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A25,C72
`Chr3:61440032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C10,C18,C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799447.1

291 aa

146

291

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 16-286 aa PF07714 PK_Tyr_Ser-Thr 20-288 aa

XP_057799448.1

291 aa

146

291

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 16-286 aa PF07714 PK_Tyr_Ser-Thr 20-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799447.1`	Pfam	`PF00069`	Pkinase	Domain	16	286	1.1e-30	107.7	Protein kinase domain
`XP_057799447.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	20	288	8.4e-34	117.8	Protein tyrosine and serine/threonine kinase
`XP_057799448.1`	Pfam	`PF00069`	Pkinase	Domain	16	286	1.1e-30	107.7	Protein kinase domain
`XP_057799448.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	20	288	8.4e-34	117.8	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057943464.1
GATTCGTAGAACGAAGGAAGTATTATTTATTCATTTAAAAATTCATTTTGGCCCAAACTTATTGGGCCTGATCTTTTAGGCCTAGTATAACATATAAGTGAGCCCAAATTAGAAAACTGAATTCCAAGGCCCAAAATAAAAGTACAGTTTGTCTTCCAAACTTTCGCCATATTTTTTCAATCTAAGCACCTAAGTTATGCTCCGAACTTTCACTCTTTTTCTCTAATCTAAAAATATATTCAAATTACTTAGATTTTGTA...

XM_057943465.1
GATTCGTAGAACGAAGGAAGTATTATTTATTCATTTAAAAATTCATTTTGGCCCAAACTTATTGGGCCTGATCTTTTAGGCCTAGTATAACATATAAGTGAGCCCAAATTAGAAAACTGAATTCCAAGGCCCAAAATAAAAGTACAGTTTGTCTTCCAAACTTTCGCCATATTTTTTCAATCTAAGCACCTAAGTTATGCTCCGAACTTTCACTCTTTTTCTCTAATCTAAAAATATATTCAAATTACTTAGATTTTGTA...

CDS

2 records

下载 CDS FASTA

LOC131015192
ATGGCCATAGAATATGAAGAGATAAGAAAAGCTACAAAAAACTTCGAATCCGAGGTGTTGGTGGGGAGAGGAGGATTCGGTAGCGTTATTTATAATGGATGGATTGACGAGCAGAAGCTTACCGCAGTGAAGCCTGCATCTGGAATTGCTGTTGCTATCAACAAGATGAATCTTCAACAACATAAGGAGTGGGTGGATGAAATAAATTATTTGAGGCAACTCCGTCACCCGAATTTGGTGAAGCTTATTGGATATGGCTG...

Protein

2 records

下载 Protein FASTA

XP_057799447.1
MAIEYEEIRKATKNFESEVLVGRGGFGSVIYNGWIDEQKLTAVKPASGIAVAINKMNLQQHKEWVDEINYLRQLRHPNLVKLIGYGCNTDKRIVVYEFMPKGSLYNHLFTSGHEALPWATRTKVAIGAATALAFLHALEIPVIHGALQSSDILFDGDFNTKLSNFGIARECPTGCDAAQFINIYGAPEYITTGRSSTRSDVYGFGVVLLELMSGRPVWDRTRPAEEGQLVKWARPYLRDERRVGEMMDSRLMGEYTIKEA...

XP_057799448.1
MAIEYEEIRKATKNFESEVLVGRGGFGSVIYNGWIDEQKLTAVKPASGIAVAINKMNLQQHKEWVDEINYLRQLRHPNLVKLIGYGCNTDKRIVVYEFMPKGSLYNHLFTSGHEALPWATRTKVAIGAATALAFLHALEIPVIHGALQSSDILFDGDFNTKLSNFGIARECPTGCDAAQFINIYGAPEYITTGRSSTRSDVYGFGVVLLELMSGRPVWDRTRPAEEGQLVKWARPYLRDERRVGEMMDSRLMGEYTIKEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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