Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G004311`

染色体: Chr03 坐标: 61475958-61478151 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G004311`
名称	SmilChr03G004311
描述	probable indole-3-pyruvate monooxygenase YUCCA4
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	61475958 - 61478151 / `+`

ID 对照

NCBI Gene ID	`LOC131015194`
GeneID	`131015194`
locus_tag	`-`
NCBI Name	`LOC131015194`
原始查询	`LOC131015194`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable indole-3-pyruvate monooxygenase YUCCA4
产物	probable indole-3-pyruvate monooxygenase YUCCA4
Arabidopsis	`AT5G11320` (YUC4) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831003] identity=69.5; qcov=0.928; evalue=0; confidence=high
Rice	`Os04g0128900` (YUCCA7) - identity=61.7; qcov=0.914; evalue=2.54e-173; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0009851 (auxin biosynthetic process); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00743 (FMO-like); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131015194

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.40000	`XP_057799449.1`
2	Lipid droplet	脂滴	0.40000	`XP_057799449.1`
3	Mitochondrion	线粒体	0.20000	`XP_057799449.1`
4	Nucleus	细胞核	0.00000	`XP_057799449.1`
5	Chromosome	染色体	0.00000	`XP_057799449.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:61476248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr3:61476263`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,A5
`Chr3:61476462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B65
`Chr3:61476515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr3:61476537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B117,B31,C15,C54,C86
`Chr3:61476649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr3:61476689`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B64,C16
`Chr3:61476697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,C54
`Chr3:61476744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr3:61476764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr3:61476780`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr3:61476932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799449.1

417 aa

208

417

Pyr_redox_2

Pyr_redox_3

FMO-like

Lys_Orn_oxgnase

PF07992 Pyr_redox_2 17-207 aa PF13738 Pyr_redox_3 17-208 aa PF00743 FMO-like 18-328 aa PF13434 Lys_Orn_oxgnase 82-203 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057799449.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	17	207	2.2e-13	51.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057799449.1`	Pfam	`PF13738`	Pyr_redox_3	Family	17	208	4.1e-27	96.0	Pyridine nucleotide-disulphide oxidoreductase
`XP_057799449.1`	Pfam	`PF00743`	FMO-like	Family	18	328	1.7e-25	90.2	Flavin-binding monooxygenase-like
`XP_057799449.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	82	203	2e-11	44.3	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057943466.1
TACAACACCTCAAAGCACACAGAAACACTCCACATTGTCCCTCTCTCTCACTTCACACACACACCCATCGCCAATTACACCTCCGCAATCCTGCAAAGGCTGTGAAGAAAAAACCTCGAGCAAAAAAAAAACAGAAAAAAAAAAAAAAAAAAACGCACAACACACACTGATTCCTTCTTTTTATACTTCCCTCGGCCCGCTTTCCGAAATGGCTCATTTAAAAAAGGAGTTGAAGTGCGTGTTCCACCCCGGGCCCATCA...

CDS

1 records

下载 CDS FASTA

LOC131015194
ATGGCTCATTTAAAAAAGGAGTTGAAGTGCGTGTTCCACCCCGGGCCCATCATCGTTGGCGCCGGCCCGTCGGGCCTCGCCGCCGCCGCGTGCCTCGGCGAGAGCGGCGTCCCGGCGCTCCTCCTCGAGCGCAGCGCCTGCATCGCCTCCCTCTGGCAGCAGCGCACCTACGATCGCCTCAAGCTCCACCTCCCGCGCCAATTCTGCGAGCTCCCCTACCTCAATTTCCCCTCGCATTTCCCCAAATATCCAACCAAGGA...

Protein

1 records

下载 Protein FASTA

XP_057799449.1
MAHLKKELKCVFHPGPIIVGAGPSGLAAAACLGESGVPALLLERSACIASLWQQRTYDRLKLHLPRQFCELPYLNFPSHFPKYPTKDQFVSYMEAYARHFSIEPRFKQAVLDARYDAVSGLWRVQTADCLYVSRWLVVATGENAEPVQPEIHGLDRFHGPVLHTSDYRSGSDFFRKKVLVVGCGNSGMEVSLDLCRHHASPSIVVRNSVHILPREMWGVSTFSMAMVLLKWLPLKLVDKFLLLVANFKFGKTAKLGLRRP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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