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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G004312

染色体: Chr03 坐标: 61492284-61497190 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G004312
名称SmilChr03G004312
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向61492284 - 61497190 / -

ID 对照

NCBI Gene IDLOC131015195
GeneID131015195
locus_tag-
NCBI NameLOC131015195
原始查询LOC131015195

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物probable LRR receptor-like serine/threonine-protein kinase At3g47570
ArabidopsisAT4G20140 (GSO1)
Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:827760]
identity=33.7; qcov=1.07; evalue=0; confidence=low
RiceOs02g0216000 (B1307A11.13)
-
identity=39; qcov=1.02; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro-
eggNOG-
NRGeneID:131015195

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057799450.1
2 Nucleus 细胞核 0.00000 XP_057799450.1
3 Chromosome 染色体 0.00000 XP_057799450.1
4 Centromere 着丝粒 0.00000 XP_057799450.1
5 Chromatin 染色质 0.00000 XP_057799450.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:61493217 G A EMS_canonical_SNV CDS_variant 3 B11,B56,B96
Chr3:61493227 G A EMS_canonical_SNV stop_gained 78 A13,A15,A18,A19,A21,A23,A4,A7,A8,A9,B105,B108,B113,B119,B122,B128,B129,B13,B15,B16,B22,B23,B26,B28,B35,B36,B38,B39,B4,B40,B41,B44,B47,B54,B56,B57,B59,B61,B67,B72,B75,B78,B84,B86,B88,B91,B93,B95,B96,B97,C11,C13,C15,C17,C22,C23,C24,C26,C27,C3,C30,C34,C4,C40,C42,C43,C45,C46,C51,C55,C6,C62,C69,C78,C79,C81,D2,D8
Chr3:61493257 C T EMS_canonical_SNV CDS_variant 2 B38,B39
Chr3:61493302 G A EMS_canonical_SNV stop_gained 2 B56,B96
Chr3:61493302 G A EMS_canonical_SNV CDS_variant 2 B56,B96
Chr3:61493357 C T EMS_canonical_SNV CDS_variant 1 B27
Chr3:61493362 C T EMS_canonical_SNV CDS_variant 1 B117
Chr3:61493380 G A EMS_canonical_SNV CDS_variant 2 B104,C74
Chr3:61493416 C T EMS_canonical_SNV CDS_variant 2 B129,B13
Chr3:61493439 C T EMS_canonical_SNV CDS_variant 1 C54
Chr3:61493470 C T EMS_canonical_SNV CDS_variant 2 B61,C87
Chr3:61493496 G A EMS_canonical_SNV CDS_variant 3 B68,C34,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057799450.1
1158 aa
N
1
579
1158
LRRNT_2
LRR_8
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-73 aa PF13855 LRR_8 135-185 aa PF13855 LRR_8 149-209 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 198-219 aa PF00560 LRR_1 247-269 aa PF00560 LRR_1 271-293 aa PF00560 LRR_1 295-317 aa PF00560 LRR_1 369-389 aa PF00560 LRR_1 442-463 aa PF00560 LRR_1 517-539 aa PF00560 LRR_1 542-564 aa PF00560 LRR_1 566-588 aa PF00560 LRR_1 710-732 aa PF13855 LRR_8 710-769 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 878-1146 aa PF07714 PK_Tyr_Ser-Thr 880-1149 aa
XP_057799451.1
1158 aa
N
1
579
1158
LRRNT_2
LRR_8
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-73 aa PF13855 LRR_8 135-185 aa PF13855 LRR_8 149-209 aa PF00560 LRR_1 150-172 aa PF00560 LRR_1 174-196 aa PF00560 LRR_1 198-219 aa PF00560 LRR_1 247-269 aa PF00560 LRR_1 271-293 aa PF00560 LRR_1 295-317 aa PF00560 LRR_1 369-389 aa PF00560 LRR_1 442-463 aa PF00560 LRR_1 517-539 aa PF00560 LRR_1 542-564 aa PF00560 LRR_1 566-588 aa PF00560 LRR_1 710-732 aa PF13855 LRR_8 710-769 aa PF00560 LRR_1 734-755 aa PF00069 Pkinase 878-1146 aa PF07714 PK_Tyr_Ser-Thr 880-1149 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057799450.1 Pfam PF08263 LRRNT_2 Family 33 73 1.4e-08 35.6 Leucine rich repeat N-terminal domain
XP_057799450.1 Pfam PF13855 LRR_8 Repeat 135 185 2.9e-48 162.2 Leucine rich repeat
XP_057799450.1 Pfam PF13855 LRR_8 Repeat 149 209 2.9e-48 162.2 Leucine rich repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 150 172 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 174 196 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 198 219 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 247 269 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 271 293 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 295 317 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 369 389 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 442 463 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 517 539 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 542 564 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 566 588 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 710 732 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF13855 LRR_8 Repeat 710 769 2.9e-48 162.2 Leucine rich repeat
XP_057799450.1 Pfam PF00560 LRR_1 Repeat 734 755 4.1e-58 181.4 Leucine Rich Repeat
XP_057799450.1 Pfam PF00069 Pkinase Domain 878 1146 1.4e-40 140.1 Protein kinase domain
XP_057799450.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 880 1149 9e-40 137.3 Protein tyrosine and serine/threonine kinase
XP_057799451.1 Pfam PF08263 LRRNT_2 Family 33 73 1.4e-08 35.6 Leucine rich repeat N-terminal domain
XP_057799451.1 Pfam PF13855 LRR_8 Repeat 135 185 2.9e-48 162.2 Leucine rich repeat
XP_057799451.1 Pfam PF13855 LRR_8 Repeat 149 209 2.9e-48 162.2 Leucine rich repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 150 172 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 174 196 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 198 219 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 247 269 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 271 293 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 295 317 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 369 389 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 442 463 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 517 539 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 542 564 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 566 588 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 710 732 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF13855 LRR_8 Repeat 710 769 2.9e-48 162.2 Leucine rich repeat
XP_057799451.1 Pfam PF00560 LRR_1 Repeat 734 755 4.1e-58 181.4 Leucine Rich Repeat
XP_057799451.1 Pfam PF00069 Pkinase Domain 878 1146 1.4e-40 140.1 Protein kinase domain
XP_057799451.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 880 1149 9e-40 137.3 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057943468.1
ATACAGTCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCCTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTTCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGC...
XM_057943467.1
ATACAGTCACAATTTGCAGCCATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCCTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTTCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGC...

CDS

2 records

下载 CDS FASTA
LOC131015195
ATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCCTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTTCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACAT...
LOC131015195
ATGGAGAAAAAGCTTTATTGCATTTTGCCTTATGCATTCCTAATTACCATAACCTTCCCAATGCTTTCCTCTGAAGCCAAACAACCTTTGAGCCTTGCAACTGATCAAACTTCCCTTCTTTCACTCAAACAACACATCACCTCCGACCCTTCTCTTTTACTCGCAACTAATTGGACCAATTCGAGCTCCGTCTGCAGCTGGATTGGCGTCACTTGCAGCTTCCGCCACCACAGAGTAGCTGCCTTGAATCTCTCCAACAT...

Protein

2 records

下载 Protein FASTA
XP_057799450.1
MEKKLYCILPYAFLITITFPMLSSEAKQPLSLATDQTSLLSLKQHITSDPSLLLATNWTNSSSVCSWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLTNNLFHGDLPQDLSLLRRLKFISFRLNNFTGDIPPMFGQLPKLEYLSLSNNSFIGSIPKSLSNLTNLQLLDLSYNSLSGEIPKELGRLQSLKTLYVRFNHLSGAIPSSIFNISTLVSMGFTYNELSGSLPTDMCSNLPSLTGIYLSSNQLSG...
XP_057799451.1
MEKKLYCILPYAFLITITFPMLSSEAKQPLSLATDQTSLLSLKQHITSDPSLLLATNWTNSSSVCSWIGVTCSFRHHRVAALNLSNMALSATIPPQLGHLSFLVSLDLTNNLFHGDLPQDLSLLRRLKFISFRLNNFTGDIPPMFGQLPKLEYLSLSNNSFIGSIPKSLSNLTNLQLLDLSYNSLSGEIPKELGRLQSLKTLYVRFNHLSGAIPSSIFNISTLVSMGFTYNELSGSLPTDMCSNLPSLTGIYLSSNQLSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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